KEGG   Lutra lutra (Eurasian river otter): 125109049
Entry
125109049         CDS       T08100                                 
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
  KO
K08735  DNA mismatch repair protein MSH2
Organism
llv  Lutra lutra (Eurasian river otter)
Pathway
llv01524  Platinum drug resistance
llv03430  Mismatch repair
llv05200  Pathways in cancer
llv05210  Colorectal cancer
Brite
KEGG Orthology (KO) [BR:llv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    125109049
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    125109049
  09162 Cancer: specific types
   05210 Colorectal cancer
    125109049
  09176 Drug resistance: antineoplastic
   01524 Platinum drug resistance
    125109049
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:llv03400]
    125109049
DNA repair and recombination proteins [BR:llv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     125109049
SSDB
Motif
Pfam: MutS_V MutS_III MutS_IV MutS_I MutS_II AAA_27
Other DBs
NCBI-GeneID: 125109049
NCBI-ProteinID: XP_047601603
LinkDB
Position
9:complement(74128668..74211002)
AA seq 934 aa
MAVQPKETLQLESASEVGFVRFFQAMPEKPTTTVRLFDRGDFYTAHHEDALLAAREVFKT
QGVVKYLGPAGTKTLESVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGSKASKENDWYLA
FKASPGNLSQFEDILFGNNDMSASIGVVGIKMSTVDGQRQVGVGYVDSIQRKLGLCEFPD
NDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQVIQRGGILITERKRADFLTKDIYQD
LNRLLKGKKGEQVNSAVLPEMENQVAASSLSAVIKFLDLLSDDSNFGQFELTMFDFSQYM
KLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLLDKNRIEERL
NLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIRA
LEKYEGKHQSLLLAIFVTPLIDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSE
LREIMDDLEKKMQSTLVNAARDLGLDPGKQIKLDSNAQFGYYFRVTCKEEKVLRNNKNFS
TVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLA
QLDAVVSFAHVSNGAPVPYVRPVILEKGQGRITLKASRHACVEVQDEVAFIPNDVHFEKD
KQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF
ATHFHELTALANHIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHV
IECARQKALELEEFQNIGESQGYDDMEPTAKRCYLEREQGEKIIQEFLSKVKQVPFTEMS
EENITMKLKQLKAEVIAKNNSFVNEIISRIKVTT
NT seq 2805 nt   +upstreamnt  +downstreamnt
atggcggtgcagccgaaggagacactgcagctggagagcgcgtccgaggtcggcttcgtg
cgcttcttccaggcgatgccggagaagccgaccaccacggtgcgcctcttcgaccggggc
gacttctacacggcgcaccacgaggacgcgctgctggccgcccgagaagtgttcaagacc
cagggggtagtcaagtacttagggccggcaggaacaaagaccttggagagtgttgtgctt
agtaaaatgaattttgagtcttttgtaaaagatcttcttctagttcgacagtacagagtc
gaagtttataagaatagagctggaagtaaggcctcaaaggagaatgattggtatttggca
tttaaggcttctccaggcaatctttcgcagtttgaagacattctctttggtaacaatgat
atgtcagcttccattggtgttgtgggtattaaaatgtctacagttgatggccaaagacag
gttggagttgggtatgttgactctatacagaggaagctaggactttgtgagttccctgat
aatgatcagttctccaatttggaggctcttctgattcagattggaccaaaggaatgtgtc
ctgccaggaggagagactgctggagacatgggaaaactgaggcaggttattcagagagga
ggaattctgatcacagaaagaaaaagagctgactttttgacaaaagatatctatcaggac
ctcaaccggttgttgaaaggcaaaaagggagagcaggtgaatagtgctgtcttgccagaa
atggagaatcaggttgcagcttcatcattgtctgcagtaatcaagtttttagatctccta
tccgatgattcgaacttcggacagtttgaactgactatgtttgacttcagccagtacatg
aagttggatattgcagcagtcagagcccttaaccttttccagggttctgttgaagatact
actggctctcagtctctggctgcactgctgaataaatgcaaaacccctcagggacaaaga
ctggtcaaccagtggattaagcagcctctcctggataagaacagaatagaagagagactg
aatttagtggaggcttttgtagaagatgcagaattgaggcagagtttacaagaagattta
cttcgtcgattcccagatcttaaccgacttgccaagaaatttcagagacaagcagcaaac
ttacaagattgttaccgactgtatcagggtataaatcaactccctaacgttattcgggct
ctggaaaaatatgaaggaaaacaccagagtttattgttggccatttttgtcactcctctt
attgatcttcgttctgatttctccaaatttcaggaaatgatagaaacaactttagatatg
gatcaggtggaaaaccatgaattccttgtgaaaccttcatttgatcccaatctgagtgaa
ttaagagaaataatggatgacttagaaaagaagatgcagtcaacattagtaaatgcggcg
agagatctaggtttggatcctggcaaacagattaaactggattccaatgcacagtttggt
tattactttcgcgtaacatgtaaggaagaaaaagtccttcgtaacaataaaaacttcagt
acggtggacattcagaagaatggtgttaaatttaccaacagtaaactgacttctctcaat
gaagagtataccaaaaataaaactgagtatgaggaagcccaggatgccattgttaaagaa
attgtcaatatttcttcaggatacgtagaaccaatgcagacactcaatgatgtgttagct
cagctagatgctgttgtcagctttgctcatgtgtcaaatggagcacctgttccctatgta
cgtccagtcattttggagaaaggacaaggaagaattacactgaaagcgtccagacatgct
tgtgttgaagttcaagatgaagttgcatttattcctaatgatgttcattttgaaaaagat
aaacagatgttccacatcattactggccccaatatgggaggtaaatccacttatattcgc
caaactggggtggtagttctcatggcccagattgggtgttttgtgccgtgtgagtcagcg
gaagtgtccattgtggactgcatcctggcccgcgtaggggctggcgacagtcagttgaaa
ggagtctccacattcatggctgaaatgctagaaactgcttctattctcaggtctgcaacc
aaagattctttaataatcatagatgaattgggaagaggaacctctacatatgatggattt
ggattagcgtgggctatatcagagtacattgcgacaaagattggtgctttttgcatgttt
gcaacacattttcatgaacttactgccttggccaatcacataccaactgttaataatcta
catgtcacagcactaactactgaagaaaccttaactatgctttatcaggtgaagaaaggt
gtctgtgatcaaagttttgggattcacgttgcagagcttgcaaatttccctaggcatgta
atagagtgtgctagacagaaagctctggaactagaggagtttcagaatattggagaatca
caaggatacgatgatatggaaccaactgcaaagaggtgctatctggaaagagagcaaggt
gaaaaaattattcaggagtttttatccaaggtgaagcaagtgccttttactgaaatgtcg
gaagaaaacatcacaatgaagttaaaacagctgaaagctgaggtaatagcaaagaataat
agttttgtaaatgaaatcatttcacgaatcaaagttactacatga

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