Lutra lutra (Eurasian river otter): 125109918
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Entry
125109918 CDS
T08100
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XX) chain-like
KO
K24357
collagen type XX alpha
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125109918
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
VWA_2
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
125109918
NCBI-ProteinID:
XP_047602958
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Position
9:143331254..143354234
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AA seq
1296 aa
AA seq
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MNALTCPHLGPCLWLWLGAALGLGQGQASSRLRLAVLPEDRLQMKWREVEGSGLGYLVQV
KPMAGDAEQEVILTTKTPKATVGGLSPSKGYTVQIFKLTGSGNALLAQREFVIQDLKSHA
ANRSSRKPLEAAAEPIPSHAGSPGPEPRVASSPSQDSPTLGGAEWGLPGKEQHLARGSGG
KAPSQPSTDPEQKSQAQGSAGTTETPANPQFRCTPPTPVDMIFLVDRSWNIGHSHFQQVK
DFLASVIEPFEIGPNKVQVGLTQYSGDPQTEWDLSAFRSKDKVLAAVCSLHYKGGNTFTG
LALTHVREQNLKPGAGPRLEAAKVVVLATDGISQDDARAAGRVLKDLGVAIFAVGVKNAD
EAELRLLVSPPLDITVHSVQDFPQLGTLAGLLSRLICQKVQGGSRGPAVATPAPDTIFTP
TRLILTQATPSSVHLSWTPDPQLPLMYLVTWRPSRGGPVVLDGPTSSMTLHSLTIGTEYL
VSVFPVSEARVGEGLRGLVTTAPLPPPQALTLAAVTPTTVRLTWRPSAEATQYLVQCSPA
PPPRHQEEGREVQVGQPEVLLDSLEPGTDYDIRVQSLQGPEASEARGIRARTAALVLRRH
LGFLEVSHDSAHVFWEGVPRPVLLFRVGFVSSEGSHSGQVEAPGNATSATLGPLFSSTTY
SVCITCLYPAGGSSTLTGRLTTRKVPSPSKLSATELPRDEVQLEWAAASAXGVLVHQIKW
TPVGDGKAREISVPGSLGVAVLPSLXSHLEYEITILAYYRDGTHSDPVSLRYTSSRRSPP
SNLALASKSPSSLRVTWTPPSGHVLHYQLTYVLASGSGPEKSISVPGPSNHVTLPSLLAA
TKYRVQISAVYGAGESAPMSATGRMTCPTLSPDGAHPGFNLMVAFELVEQEHVSLRGVAM
ECAAFGCAWTFTLFKDAQLTRRASGPQLAALPPEHTVVFVLRVLPETPREAFALWQMIAE
NLQPILGVLLDAGRKSLTYFNHDPRATLQEVTFDLPEVRKIFFGSFHKVHVAVGRSKVRL
YVDCQKVAERPIGEAGSPPATGFVMLGRLAKARDPRSSSATFQLQLLHIVCSDSWAEEDV
CCELPAAKDGETCLAFSSACTCSSQTPRPPGPQGPPGLPGRNGAPGEQGFPGPRGPPGVK
GEKGDHGLPGLKGHPGHQGTPGKVGLQGPKGMRGLEGSTGLPGPPGPRGFQGTVGAGGTS
GERGPPGAMGLTGLPGPKGEQGEKGEPQSLATIYQLLGQACKSAIQAHVLKFHSFLRESA
RPPGPPSTLGEAQHPGEAGDDGLRPENRGWPPCCPQ
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccctcacatgcccccatcttgggccttgcctctggctgtggctgggtgctgcc
ttgggacttggccagggacaagcgagcagccgcctgaggctggccgtgctgcccgaggac
cggctgcagatgaagtggagggaggtggaggggagcggcctcggctacctggtgcaggtg
aagcccatggcaggcgatgcagagcaggaagtgattctgaccaccaagacccccaaggcg
acagtggggggcttgagcccctccaagggctacaccgtgcagatcttcaagctcaccggc
tctgggaacgccctgctggcgcagagggagtttgtgatccaggacctgaagagtcacgcg
gcaaacaggagcagccggaagcccctggaggcggctgcggagcccataccctcccacgcg
gggagcccaggccctgagccccgagttgcctcatccccaagtcaagactcacccactctt
ggtggcgcagaatgggggctgcctggcaaggaacagcacctagccaggggctcagggggc
aaggccccttcccagccctccacagacccggagcagaagagccaggcccagggctctgcg
ggaacgacggagacgccagccaacccccagttccgctgcacaccccccacacccgtggac
atgatcttcctggtggacaggtcctggaatattggccatagtcatttccagcaggtcaaa
gatttcctggccagcgtcattgagccctttgagatcgggccaaataaagtccaagtcggc
ctgactcagtacagtggagacccccagaccgagtgggacctcagtgccttccgcagcaag
gacaaggtgctggcagccgtctgcagcctccactacaaagggggaaacacattcacaggc
ctggccctgactcacgtgcgggagcagaacctgaagcctggagcggggccccgtctagag
gcggccaaggtggtggtcctagcgacggacggcatatcccaggatgatgcccgtgccgct
ggccgcgtcctcaaggacctgggtgtcgccatctttgctgtgggtgtgaagaacgcagac
gaggccgagctgcggctcctggtgtccccgccactggacatcaccgtccacagtgtacag
gacttcccccagcttggtaccctggccggcttgctcagccgcctcatctgccagaaggtc
caaggcgggagccggggccccgctgtggccaccccggccccggacaccatcttcactccc
accagactcatcttgacccaggcgaccccctccagcgtccacttgtcctggaccccagac
ccccagctgccactcatgtatctggtcacgtggcggccttccaggggtggccccgtggtg
ctggacgggcctacctcgtccatgacgcttcacagcctgaccatcggcaccgagtacttg
gtgtctgtgttccctgtcagtgaggccagggtcggcgagggcctgcggggccttgtgacc
acagcgcctctgcctccgccccaggcactgaccctggctgcagtgacgcccaccaccgtc
cgcctcacctggcggccatcggccgaggccacgcagtacctggtgcaatgctctccagcc
ccccccccgcgccaccaggaggagggcagagaggtgcaggtggggcagccagaggtgctg
ctggacagcctggagcctggcacggactacgacatccgggtgcagagcttgcaagggccg
gaggccagcgaggcccggggcatccgtgccaggaccgccgccctggtgctgcgcagacac
ctcggcttcttggaagtgagtcacgactcggctcatgtgttctgggagggcgtcccgagg
cccgtgctcctgttcagggtcggctttgtctccagtgagggcagccactcggggcaggtg
gaggcccctgggaatgccacctcagccactctgggtcccctgttctcctccaccacctac
tccgtctgcatcacctgcctctaccccgcgggcggctcctccacgctgaccggccggctg
accacacggaaagtccccagcccgagcaagctctcggcaacagagctccccagagacgag
gtccagctggagtgggcggccgcctcggctnttggagtgctcgtccaccagatcaagtgg
acgcccgtgggagatgggaaggcccgagagatctctgtcccagggagcctgggcgtggcg
gtcctgcctagcctctgaagccacttggagtatgagatcaccatcctggcctactacagg
gacgggacccacagtgacccggtgtccctccgctacacctcctcacgccggagcccgccc
tccaacctggccttggcttccaagtcacccagcagcctgcgagtcacctggacgcccccg
agcggccacgtcctccactaccagctcacctacgtgctggcctcaggctcaggaccagag
aagtcgatctctgtcccaggacccagcaaccatgtgacgctccccagcctgctggcagcc
accaaatatagggtccagatctcagcggtctacggagcaggggagagcgcacccatgtct
gccacaggccggatgacctgccccaccctcagccccgatggcgcccacccaggcttcaac
ctcatggtggccttcgagctggtggagcaggagcacgtgtccctccgaggcgttgccatg
gagtgtgcggcgttcggctgcgcctggaccttcacgctcttcaaggacgctcagctgacc
cgccgggccagcggcccccagctggctgcgctcccgccggagcacacggtggtcttcgtg
ctgcgcgtgctgcccgagactccccgtgaggccttcgctttatggcagatgatagctgag
aacctgcagcccatcctgggggtcctgctggatgctggtaggaagtctctgacctacttc
aaccacgaccccagggccaccctgcaagaggtgacctttgacctgcccgaagtgaggaag
attttctttggaagcttccacaaggtgcacgtggccgtgggccgctccaaggtcaggctc
tatgtggactgccagaaggtggctgagaggccgattggggaggcgggcagcccacctgcc
acgggcttcgtgatgctggggaggttggccaaggcccgggacccccggagcagctcggcc
acattccagctccagctgctgcacatcgtgtgcagtgactcctgggcagaggaggacgtg
tgctgcgagctccctgcggcgaaggatggagagacctgccttgccttctcttctgcctgc
acctgttcctcgcagacccctaggcccccagggccccaaggacctccaggcctccctgga
aggaacggagccccaggagagcagggcttcccagggcccaggggcccgccaggggtcaaa
ggagagaaaggggaccatgggctcccaggcttgaagggccatcctggtcaccagggcacc
ccagggaaggtcggcctccagggaccaaagggaatgcgaggccttgaggggagcaccggc
ctgcctggacctccaggccccaggggcttccagggcacggtcggggccgggggcaccagt
ggggagagaggacccccaggggccatggggctcacgggcctaccaggacccaaaggggag
caaggagagaagggcgagccacagtccctggccaccatctaccagctcctgggccaggcc
tgcaagtctgccatccaagctcatgtactgaagttccactccttcctccgtgagagcgcc
aggccccccgggccccccagcacactcggtgaggcccagcaccctggagaagcgggagac
gacggcctgcgccctgagaacagaggatggcccccatgctgcccacagtga
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