Lactococcus cremoris subsp. cremoris KW2: kw2_0353
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Entry
kw2_0353 CDS
T02848
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
llw
Lactococcus cremoris subsp. cremoris KW2
Pathway
llw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
kw2_0353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llw03019
]
kw2_0353
03009 Ribosome biogenesis [BR:
llw03009
]
kw2_0353
Enzymes [BR:
llw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
kw2_0353
Messenger RNA biogenesis [BR:
llw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
kw2_0353
Ribosome biogenesis [BR:
llw03009
]
Prokaryotic type
rRNA helicases
kw2_0353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AGV72336
LinkDB
All DBs
Position
348852..350507
Genome browser
AA seq
551 aa
AA seq
DB search
MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLPTI
EKINAENPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLKAGA
HIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPENRQTLLF
SATMPADIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLLDVERPE
LAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVATDVAA
RGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAIEKLTNK
EMKGLKPPTKEEAYQASLSVAMDDVLRDLSDESGKAKLAKFDKQAASLLEKFDAKELVAL
LLQGRVKDPDNQEEVKITAERPLPYNGEGKGFKKKGKGGGGRYKGRGNGDRDGNRDGNRG
GYRGNRDSKDGERGGDRKRNWKDRDDNRGGYRGKRDDRRFDDRKQGEKTPRKRTTGTEKS
AGFVMRSRGDK
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttagtgaactcggcctgtcagaaggaatcgtaaaaacacttacagagattggt
tatgaacaacctacaccaatccaagaagaaacaattaaattggcgcttgaaggacgtgac
gttcttggtcaagcgcaaacagggactggtaaaacagcggcatttggtcttcctactatt
gagaaaatcaatgctgaaaatccagccattcaagcacttgttattgctccaacccgtgaa
cttgcagttcaaggacaagaagaacttttccgttttggtaaatcaaaaggacttaaagtt
cgtactgtattcggtggttcaagtattgaaaaacaaatcaaaggacttaaagctggcgca
catatcgttgtgggaacaccaggtcgtttggttgacttgattaaacgtaaagcaatcaaa
cttgaccaacttgaaactttgattcttgatgaagcagatgaaatgcttaacatgggattt
ttggaagacattcattttattattgaaaaaacaccagaaaatcgtcaaacattgcttttc
tcagcaacaatgcctgctgatatcaaaaaaattggtgtgaaattcatgaagaatccggaa
cacatcaaaattgcagccaaagaaatgactgctgaccgtattgaccaatactttgtgaaa
acaaaagaatttgaaaaatttgatgttttgactcgtttgcttgatgttgaacgtccagaa
cttgccattgttttcggtcgtacaaaacgccgcgttgacgagttgattcgtggtcttaaa
ttacgcggatatcgtgctgaaggaatgcacggagatttggaccaaaacaaacgtttggcc
gttttgcgtgatttcaaagctggacatattgatgtcttggttgctactgacgttgccgct
cgtgggcttgacgtatcaggtgtaacacacgtttacaactacgatattacccaagaccaa
gaaagctatgttcaccgtatcgggcgtacaggtcgtgctggtaaatcaggccgctcagta
acttttgtttcatataatgaaatgggctaccttcgtgccattgaaaaattgacaaacaaa
gaaatgaaaggcttgaaaccaccaacaaaagaagaagcttaccaagcgtcactttctgtt
gcgatggatgatgttcttcgtgatttgtctgatgaatcaggtaaagcaaaattagcaaaa
tttgacaaacaagcagcaagcttacttgaaaaatttgatgctaaagaattggttgcctta
cttctccaaggacgtgttaaagaccctgataaccaagaagaagttaaaattacagccgaa
cgtccattaccatacaatggtgaaggaaaaggattcaagaaaaaaggtaaaggtggcggc
ggacgctacaaaggccgtggaaatggcgaccgtgatggtaatcgtgacggaaaccgtgga
ggctaccgtggtaatcgtgattctaaagatggcgaacgcggtggagatcgtaaacgtaac
tggaaagaccgtgatgacaatcgtggaggttaccgtggaaaacgtgatgaccgtcgcttt
gacgaccgtaaacaaggtgaaaaaactcctcgtaaacgtaccacaggaactgaaaaatca
gctggcttcgtaatgcgtagccgtggcgataaataa
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