Lactococcus cremoris subsp. cremoris KW2: kw2_1853
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Entry
kw2_1853 CDS
T02848
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit RpoC
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
llw
Lactococcus cremoris subsp. cremoris KW2
Pathway
llw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
llw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
kw2_1853 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llw03021
]
kw2_1853 (rpoC)
03400 DNA repair and recombination proteins [BR:
llw03400
]
kw2_1853 (rpoC)
Enzymes [BR:
llw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
kw2_1853 (rpoC)
Transcription machinery [BR:
llw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
kw2_1853 (rpoC)
DNA repair and recombination proteins [BR:
llw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
kw2_1853 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF6076
Motif
Other DBs
NCBI-ProteinID:
AGV73807
LinkDB
All DBs
Position
complement(1930244..1933867)
Genome browser
AA seq
1207 aa
AA seq
DB search
MVDVNKFESMRIGIASPQKIRYWSFGEVKKPETINYRTQKPEREGLFDERIFGPQKDWEC
ACGKLKGVFYKNQVCELCGVQVTTAKSRRERMGHIELAAPISHIWYFKGIPSRMGLALDM
SPRALEEVIYFASYVVIDPKETDLEKKQLLTEREYREQLLKNGFGSFVAKMGAEAIQDLL
NDVDIDKEVAELKEELKTVTGQRRVKIIRRLDVLSAFRKSGNALSWMVLNVLPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMELNAPNIIVQNEKRMLQEAVDTLIDNG
RRGRPITGAGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMAQLVKKELAANIRAAKRKVERQDSDVWDVLETVVKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKAIRLHPLACEAYNADFDGDQMAIHLPLSEEAQAEARLLMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEKGREGEGMIFATPEEVEIAMRNGYVHLHTRIGI
ATKSLNKPWTENQQDKILVTTVGKVIFNSIIPEGMPYLNEPTDVNLTTSTDDRFFMDAGQ
NIKEVLAGIDTVRPFKKGYLGNIIAEVFKRYRTTATSEYLDRLKDLGYHQSTLAGLTVGI
ADIPVVEDKHEIIDAAHKRVEQITKQFRRGLITDDERYNAVTGVWRDAKESLEKRLIEEQ
DLTNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGKIMELPIISNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLVIADIATGKEMVEPLF
ERLVGRYTRKSVLHPETGEMIIGDDTLISEDIARKIIEAGVKEVTIRSVFTCKTPHGVCK
HCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASSSDITQGLPRVQEI
FEARNPKGEAIITEVTGTVESIVEDGATRTREITVKGKTDTRSYTVGMADVLMVEEGEFI
HRGAPLIQGSIEPKHLLQVRDALSVETYLLGEVQKTYRSQGVEIGDKHIEVMVRQMLRKV
RIMDNGSTDVLPGTLMDISDFEALNETALLNGEMPATGRPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKEDHLLGLKENVIIGKIIPAGTGMFRYRNIEPLADLTNAPEVKEV
ETETVEN
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttggttgatgtaaataaatttgagagtatgcgtattggtatcgcatctccacaaaaaatt
cgttactggtcattcggtgaagtaaaaaaaccagaaacaattaactatcgtacacaaaaa
cctgaacgtgaaggactctttgacgaacgtattttcggtcctcaaaaagactgggaatgt
gcttgtggaaaacttaaaggtgttttctataagaatcaagtctgtgaactttgtggtgtt
caagtaacaactgcaaaatcacgtcgtgaacgtatgggacatattgagcttgctgctcca
atttcacatatttggtatttcaagggaattccatcacgtatgggactcgctctggatatg
agcccgcgtgcacttgaagaagtaatttacttcgcaagttatgtggtaattgatccaaaa
gaaactgatcttgagaaaaaacaactcttgactgagcgtgaatatcgtgaacaacttttg
aaaaatggttttggttcattcgttgcaaaaatgggtgctgaagcaattcaagatttgttg
aatgatgttgatattgacaaagaagttgctgaactcaaagaagagctcaaaacagtgact
ggacaacgtcgtgtaaaaattattcgtcgtttagatgttttgtcagctttcagaaaatca
ggcaatgctttatcttggatggtcttaaacgtattaccagttattccaccagatttgcgt
ccaatggttcaattagatggtggacgttttgccacatctgacttgaatgacttgtatcgt
cgtgttatcaaccgtaataaccgtttgaaacgtttgatggaacttaatgctccaaatatt
atcgttcaaaatgaaaaacggatgctccaagaagctgttgatactttgattgacaatggt
cgtcgtggtcgtccaatcactggtgctggtaaccgtccattgaaatctctttcacacatg
ttgaaagggaaacaaggacgtttccgtcaaaacttgcttggtaaacgtgttgactattct
ggacgttcagttatcgctgtcggtccaacactcaaaatgtaccaatgtggtgttccacgt
gaaatggcgattgagttgttcaaaccatttgtaatggcacaacttgtaaaaaaagaattg
gctgctaatattcgtgcggctaaacgtaaagttgaacgccaagattcagacgtttgggat
gtacttgaaacggttgttaaagaacaccctgttctccttaaccgcgcacctacgcttcac
cgtttggggattcaagcttttgaaccagtcttaattgatggtaaagccatccgtcttcac
ccacttgcttgtgaagcctataacgccgactttgacggtgaccaaatggccattcacttg
ccattgtctgaagaagcacaagctgaagcacgtcttttgatgcttgctgctgaacatatc
ttgaaccctaaagatggtaaaccagttgttacaccatcacaagatatggtccttggtaac
tactaccttacaatggaagaaaaaggtcgtgaaggcgaaggaatgatttttgcaactcct
gaagaagttgaaatcgcaatgcgtaacggttatgtacacttgcatacacgtatcggtatc
gcgacaaaatcactcaataagccttggactgaaaatcaacaagataaaatcttggtaacc
actgttggtaaagttattttcaactcaatcattccagaaggaatgccttacttgaatgaa
ccaactgatgttaacttgacaacttcaactgatgaccgcttctttatggatgctggtcaa
aacatcaaagaagttttggctggaatcgatactgttcgtccattcaaaaaaggatatctt
ggaaatattatcgccgaagtattcaaacgttaccgtacaacagctacatctgagtacctt
gaccgtttgaaagaccttggttaccaccaatctactttggctggtttgactgtgggtatc
gctgatattcctgttgttgaagataaacatgaaatcattgatgctgcgcataaacgcgta
gaacaaatcactaaacaattccgtcgcggtttgattactgatgatgaacgttataatgcc
gttactggtgtttggcgtgatgcaaaagagtctctcgaaaaacgattgattgaagaacaa
gatttgacaaacccaatcgttatgatgatggactctggagcccgtggtaatatttccaac
ttctctcaacttgctggtatgcgtggattgatggctgctcctaatggtaaaatcatggaa
ttgcctatcatctctaacttccgtgaaggactttctgtcttggaaatgttcttctcaact
cacggtgctcgtaaagggatgaccgatacggcccttaagacagccgactcaggttacctt
actcgtcgtttggttgacgttgcccaagatgttatcattcgtgaagacgattgtggtact
gaccgtggacttgtgattgctgatattgcaactggtaaagaaatggttgaaccactcttt
gaacgtttggttggtcgttacactcgtaaatcagtccttcatccagaaactggtgaaatg
attattggcgatgatactttgatttctgaagatattgctcgtaaaatcattgaagctggc
gttaaagaagtaacaatccgttcagtatttacatgtaaaacaccacatggtgtatgtaaa
cattgttatggtatcaacttggcaacaggtgatgctgttgaagttggtgaagctgttggt
acaatcgccgctcaatctatcggtgaacctggtactcagttgacaatgcgtacattccac
acgggtggtgttgcgtcaagttcagatattactcaaggtttgcctcgtgtccaagaaatc
tttgaagcacgtaaccctaaaggggaagcaatcatcactgaagtaactggtacagttgaa
tcaatcgttgaagatggcgcaactcgtactcgtgaaattactgtcaaaggtaaaacagat
actcgtagctacactgtaggtatggctgatgtcttgatggttgaagaaggcgaatttatc
caccgtggtgcgcctttgattcaaggttctattgaacctaaacatttgcttcaagttcgt
gatgctttgtcagtggaaacttacttgctcggtgaagttcaaaaaacttaccgttcacaa
ggggttgaaattggtgacaagcacatcgaggtaatggttcgccaaatgcttcgtaaagtt
cgtatcatggacaatggttcaactgatgtgcttccaggtactttgatggacatttctgat
tttgaagctttgaatgaaactgcactcttgaatggtgaaatgcctgcaactggtcgtcca
gtcttgatgggtattactaaagcctctcttgaaacaaattcattcttgtcagctgcatca
ttccaagaaacaactcgtgtccttactgatgccgcaattcgtggtaaagaagaccacttg
cttggtttgaaagaaaatgttattatcggtaagattattcctgctggtactggtatgttc
cgttaccgtaacatcgaacctttagctgatttgacaaatgctccagaagtaaaagaagtt
gaaacagaaactgtggaaaactaa
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