Lactococcus lactis subsp. lactis NCDO 2118: NCDO2118_0469
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Entry
NCDO2118_0469 CDS
T03437
Symbol
rhe
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
llx
Lactococcus lactis subsp. lactis NCDO 2118
Brite
KEGG Orthology (KO) [BR:
llx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llx03019
]
NCDO2118_0469 (rhe)
03009 Ribosome biogenesis [BR:
llx03009
]
NCDO2118_0469 (rhe)
Enzymes [BR:
llx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCDO2118_0469 (rhe)
Messenger RNA biogenesis [BR:
llx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCDO2118_0469 (rhe)
Ribosome biogenesis [BR:
llx03009
]
Prokaryotic type
rRNA helicases
NCDO2118_0469 (rhe)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
AII11967
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All DBs
Position
460171..461511
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AA seq
446 aa
AA seq
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MKFTDFNFKDYINQTLENIKFEKPTEVQENLIPIVLSGRDLVGESKTGSGKTHTFLLPIF
QKIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESS
QPHVVIGTPGRIHDLINSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML
VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATN
PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI
AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKMG
VTFQPKAIKDGEIVDSYDRDRREKRTKKQDEISTKTIGALKKGKKHVKPGYKRAIKWQIE
EDNKKKRRAERNKNARKTRDSRKQSF
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttacagactttaattttaaagattatattaaccaaacgttagagaatatcaaa
tttgaaaaaccaactgaagtacaagaaaatttgattccaattgttctctcaggccgtgac
ttggtaggggaatcaaaaactggttcaggaaaaacacacacttttttactcccaattttc
caaaaaattgatactgatcttgatgaagtgcaagcagtcattacggctccttcacgtgaa
ttagctactcaaatttacaaagcagctcaagaatttacaaaagttaatgacaagcttcgt
gtttcaaactttgttggtgggactgataaggcccgtcaaatcaaaaaattggaatcatca
caaccacatgtcgtaattggaacaccaggtcgaatccatgatttaatcaattctaatgct
ttaattgtgcatactgctaatacttttgttgttgatgaagcggatatgacgcttgacatg
ggatttttggcagatgttgaccaaattgcttcaagttttggtaaacgcgtgcaaatgctc
gttttctcagcaactattcctcaaaaacttcaaccatttttgaaaaaatatttgcataat
cctgtcatgcaaaaaatcgccaataagacagtaatttcagatacaatcgaaaattggctt
gtttctaccaaaggaagttcacataaccaacttttgctccaattgacaaaagcaacgaat
ccttacatggcaatgatttttgccaataccaaaggtcgtgttgatgacattcatcatttc
ttgacaagtaacggacttaaagttgcaaaaattcatggtgatgtaccgccacgtgaacgt
aaacgtatcatgaattcaattaaaaatttggattatcaatatgttgtggcaaccgatatt
gccgcgcgtggaattgatattgaaggtgtatcacacattatcaatgatgaaattccaaaa
gatttaactttctttgttcaccgagtgggtcgttctggccgtaatggattacaaggaaca
gccattacactctatagtccttctgatgattcaagtattcgtgagattgaaaaaatgggt
gttacattccaaccaaaagctattaaagatggtgaaattgttgattcttatgaccgtgac
cgtcgtgaaaaacggacgaaaaaacaagatgaaatttcaacaaaaaccattggtgccctt
aaaaaaggtaaaaaacacgttaaaccaggttacaaacgtgcaattaaatggcaaattgaa
gaagataacaagaaaaaacgccgtgctgagcgtaataaaaatgcccgtaaaacacgtgat
tctcgtaaacaaagtttctaa
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