Lactococcus lactis subsp. lactis NCDO 2118: NCDO2118_1905
Help
Entry
NCDO2118_1905 CDS
T03437
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
llx
Lactococcus lactis subsp. lactis NCDO 2118
Pathway
llx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
llx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCDO2118_1905 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llx03021
]
NCDO2118_1905 (rpoC)
03400 DNA repair and recombination proteins [BR:
llx03400
]
NCDO2118_1905 (rpoC)
Enzymes [BR:
llx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCDO2118_1905 (rpoC)
Transcription machinery [BR:
llx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCDO2118_1905 (rpoC)
DNA repair and recombination proteins [BR:
llx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCDO2118_1905 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF6076
Motif
Other DBs
NCBI-ProteinID:
AII13360
UniProt:
A0ABC8A7Q8
LinkDB
All DBs
Position
complement(2041999..2045622)
Genome browser
AA seq
1207 aa
AA seq
DB search
MVDVNKFESMRIGIASPQKIRYWSFGEVKKPETINYRTQKPEREGLFDERIFGPQKDWEC
ACGKLKGVFYKNQVCELCGVQVTTAKSRRERMGHIELAAPISHIWYFKGIPSRMGLALDM
SPRALEEVIYFASYVVIDPKETDLEKKQLLTEREYREQLLKNGFGSFVAKMGAEAIQDLL
NDVDIDKEVSELKEELKTVTGQRRVKIIRRLDVLSAFRKSGNALSWMVLNVLPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMELNAPNIIVQNEKRMLQEAVDTLIDNG
RRGRPITGAGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMAQLVKKELAANIRAAKRKVERQDSDVWDVLETVVKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKAIRLHPLACEAYNADFDGDQMAIHLPLSEEAQAEARLLMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEKGREGEGMIFATPEEVEIAMRNGYVHLHTRIGI
ATKSLNKPWTENQKDKILVTTVGKVIFNSIIPEGMPYLNEPTDVNLTTSTDDRFFMDAGQ
DIKEVLAGIDTVRPFKKGYLGNIIAEVFKRYRTTATSEYLDRLKDLGYHQSTLAGLTVGI
ADIPVVEDKHEIIDAAHKRVEQITKQFRRGLITDDERYNAVTGVWRDAKEALEKRLIDEQ
DLTNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGKIMELPIISNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLVISDIATGKEMVEPLF
ERLVGRYTRKSVLHPETGEMIIADDTLISEDVARKIIDAGVKEVTIRSVFTCKTPHGVCK
HCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASSSDITQGLPRVQEI
FEARNPKGEAIITEVTGTVESIVEDPATRTREITVKGKTDTRSYTVGMADVLMVEEGEFI
HRGAPLIQGSIEPKHLLQVRDALSVETYLLGEVQKTYRSQGVEIGDKHIEVMVRQMLRKV
RVMDNGSTDILPGTLMDISDFEALNETALLNGEMPATGRPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKEDHLLGLKENVIIGKIIPAGTGMFRYRNIEPLADLTNAPEVEEV
ETETVEN
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttggttgatgtaaataaatttgagagtatgcgtattggtatcgcatctccacaaaaaatt
cgttactggtcattcggtgaagttaaaaaaccagaaacaattaactatcgtacacaaaaa
cctgaacgtgaaggactctttgatgaacgtattttcggtcctcaaaaagactgggaatgt
gcttgtggaaaacttaaaggtgttttctacaaaaatcaagtctgtgaactttgtggtgtt
caagtaacaactgcaaaatcacgtcgtgaacgtatgggacatattgagcttgctgctcca
atttcacacatttggtacttcaaaggaattccatcacgtatgggacttgctcttgatatg
agtccacgtgcacttgaagaagtaatttactttgcaagttatgtcgtgattgatcctaaa
gaaactgatcttgagaaaaaacaactcttgactgaacgtgaatatcgtgaacaacttttg
aaaaatggttttggttcattcgttgcaaaaatgggtgctgaagcgattcaagatttgttg
aacgatgttgatattgataaagaagtttctgaactcaaagaagagctcaaaacagttact
ggacaacgtcgtgtaaaaattattcgtcgtttggacgttttgtcagctttcagaaaatca
ggaaatgctttatcttggatggtcttaaacgtattaccagttattccaccagatttacgt
ccaatggttcaattggatggtggacgttttgccacatctgacttgaatgacttataccgt
cgtgttattaaccgtaataaccgtttgaaacgtttgatggaacttaatgctccaaatatt
atcgttcaaaatgaaaaacggatgcttcaagaagctgttgatactttgattgacaatggt
cgtcgtggtcgtccaatcactggtgctggtaaccgcccattgaaatctctttcacacatg
ttgaaagggaaacaaggacgtttccgtcaaaacttgcttggtaaacgtgttgactattct
ggacgttcagttatcgctgtaggtccaacactcaaaatgtaccaatgtggtgttccgcgt
gaaatggcgattgagttgttcaaaccattcgtaatggctcaacttgttaagaaagaattg
gctgctaatattcgtgcggctaaacgtaaagttgaacgtcaagattctgatgtttgggat
gtacttgaaacagttgttaaagaacaccctgttcttcttaaccgcgcacctacgcttcac
cgtttggggattcaagcttttgaaccagtcttaattgatggtaaagccatccgtcttcac
ccacttgcttgtgaagcctataacgccgactttgacggtgaccaaatggccattcacttg
ccattgtctgaagaagcacaagctgaagcacgtcttttgatgcttgctgctgaacatatc
ttgaaccctaaagatggtaaaccagttgttacaccatctcaagatatggtccttggtaac
tactaccttacgatggaagaaaaaggtcgtgaaggcgaaggaatgatttttgcaactcct
gaagaagttgaaattgcaatgcgtaatggttatgtacatttacatactcgtatcggtatc
gcaacaaaatcactcaacaaaccttggacagaaaaccaaaaagataaaatcttggtaacc
actgttggtaaagttattttcaactcaatcattcctgagggaatgccttacttgaatgaa
ccaactgatgttaacttgacaacttcaactgatgaccgcttctttatggacgctggtcaa
gatatcaaagaagttttggctggaattgatactgttcgtccattcaaaaaaggatatctt
ggaaatatcatcgctgaggtcttcaaacgttaccgtacaacagctacatctgagtacctt
gaccgcttgaaagaccttggttatcaccaatctactttggctggtttgactgtgggtatc
gccgatatccctgttgttgaagataaacatgaaatcatcgatgctgcacacaaacgtgtg
gaacaaatcactaaacaattccgtcgtggtttgattactgatgatgaacgttataacgct
gttacaggtgtttggcgtgatgcaaaagaagcccttgaaaaacgattgattgatgaacaa
gatttgacaaacccaattgttatgatgatggactctggagcccgtggtaatatctctaac
ttctctcaacttgctggtatgcgtggtttgatggccgctcctaatggtaaaatcatggaa
ttgcctatcatctcaaacttccgtgaaggtctttctgtcttggaaatgttcttctcaact
cacggtgcccgtaaagggatgaccgatacggcccttaagacagccgactctggttatctt
actcgtcgtttggttgacgttgcccaagatgttatcattcgtgaagacgactgtggaact
gaccgtggacttgtaatttctgatattgctactggtaaagaaatggttgaaccactcttt
gaacgtttggtaggtcgttatactcgtaaatcagtgcttcatccagaaactggtgaaatg
attattgctgacgacactttgatttctgaagatgttgcccgtaaaattattgatgctggt
gttaaagaagtaactatccgttcagtatttacatgtaaaactccacatggtgtatgtaaa
cattgttatggtatcaacttggcaacaggtgatgctgttgaagttggtgaagctgttggt
acaatcgccgctcaatcaatcggtgaacctggtactcagttgacaatgcgtacattccac
acgggtggtgttgcgtcaagttcagatatcactcaagggttgcctcgtgttcaagaaatc
tttgaagcacgtaaccctaaaggggaagcaatcatcactgaagtaactggtacagttgaa
tcaatcgttgaagatcctgctacacgtactcgtgaaattactgttaaaggtaaaacagac
actcgtagctacactgtaggtatggctgatgtcttgatggttgaagaaggtgaatttatt
caccgtggtgcacctttgattcaaggttctatcgaacctaaacacttgcttcaagttcgt
gatgctttgtcagttgaaacttacttgctcggtgaagtacaaaaaacttaccgttcacaa
ggggttgaaattggtgacaaacacatcgaggtaatggttcgccaaatgcttcgtaaagtt
cgtgtcatggataatggttcaactgatatccttccaggtactttgatggatatttctgac
tttgaagctttgaatgaaactgcactcttgaatggtgaaatgcctgcaactggtcgtcca
gtcttgatgggtattactaaagcctctcttgaaacaaattcattcttgtcagctgcatca
ttccaagaaactactcgtgtccttactgatgccgcaattcgtggtaaagaagatcacttg
cttggtttgaaagaaaatgttattatcggtaagattattcctgctggtacaggtatgttc
cgttaccgtaacattgaacctttagctgatttaacaaatgctccagaagtagaagaagtt
gaaacagaaactgtggaaaactaa
DBGET
integrated database retrieval system
