KEGG   Legionella lytica: J2N86_01390
Entry
J2N86_01390       CDS       T08304                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
lly  Legionella lytica
Pathway
lly03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    J2N86_01390 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lly03021]
    J2N86_01390 (rpoC)
   03400 DNA repair and recombination proteins [BR:lly03400]
    J2N86_01390 (rpoC)
Enzymes [BR:lly01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     J2N86_01390 (rpoC)
Transcription machinery [BR:lly03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     J2N86_01390 (rpoC)
DNA repair and recombination proteins [BR:lly03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      J2N86_01390 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Peptidase_M23
Other DBs
NCBI-ProteinID: USQ15078
LinkDB
Position
334792..338991
AA seq 1399 aa
MSDLLGILKQQGQSEEFDAIKIALASPELIRSWSYGEVKKPETINYRTFKPERDGLFCAK
TFGPVKDYECLCGKYKRLKHRGVICEKCGVELALAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFEAFVVVEPGMTELERGQLLNDEAYLDAMEQYGDEFDARM
GAEAIRDLLRQVSLEDEIKNLREELPTTNSETKIKKITKRLKLLEAFYESGNKPEWMIMD
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKKMALELFKPFIFSKLEFRGLATTIKAAKKMVEREESVVWDILDDVIREHP
ILLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAYNADFDGDQMAVHVPLTLEAQLEA
RSLMMSTNNILSPASGEPIIVPSQDVVLGLYYLTREKVNALGEGKIFVSAQEAQNFYESN
HLDIHAKIKIRMAKENGEEGYHLVETTVGRAILAEVLPKGMPFATINRTMTKKMISKVID
GCYRIFGLKETVMFADKLMYTGFKYATRSGISIGIEDMEIPDDKASIIEHADNEVREIES
QFRSGLVTNGERYNKVIDIWSRTNELVAKSMMAKIATEAVTDAKGNETRQESFNPIFMMA
DSGARGSAAQIRQLAGMRGLMAAPDGSIIETPITANFREGLNVFQYFISTHGARKGLADT
ALKTANSGYLTRRLVDVAQDVVITEDDCGVETGILMQPLIEGGDIVEPLHERVLGRVVAA
DVYIPNQTEPVVTAGTLLDEDWVEQLEKQSVDQVMVRSPITCLTRFGLCAKCYGRDLARG
HLVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGAASRATAANNIQIKTKGVIRLHNIKTV
THENKNLVAVSRSGEVTIVDEFGRERERYKLPYGAVISVQDNSPVDAGQVIATWDPHTHP
VISEVSGYLKFVDLIDGITMNRQTDELTGLSNIVIIDAKQRSAAGRDLRPMVKLVTADGD
DIFLAGTNVPAQYYLPVDAIVNFEDGGLVGIGDVIARIPQERSKTRDITGGLPRVADLFE
ARKPKDSAVMAEVSGLVNFGKETKGKRRLIINVSEDQCHEELIPKWRHISVFEGEHVERG
ELIAEGALNPHDILRLLGVGALANYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKRVIT
FAGDSKFLAGEQIEESAMLQENDKLIAEGKQPARGTPILLGITKASLATESFISAASFQE
TTRVLTEAAVSGKIDDLRGLKENVMVGRLIPAGTGYAYHQSRKAKRAKAAAGEHVMHTVT
ASDVEHALSEALNADNQEH
NT seq 4200 nt   +upstreamnt  +downstreamnt
atgagcgatttgcttgggattctcaagcaacaagggcaaagtgaagagttcgacgcaatt
aaaattgcgttggcctctccggaattaattcgctcttggtcttatggtgaggtaaaaaaa
ccagaaacgattaattaccgtacctttaagcctgagcgtgatggtttattctgtgctaaa
acgtttggcccagtaaaagattatgaatgtttatgtggtaaatataagcgcttaaaacac
cgtggtgttatttgcgaaaaatgcggtgttgaacttgcattagctaaagtacgtcgtgag
cgtatggggcacattgaactggcgagtccagtagctcatatttggttcttaaaatcatta
ccatccagaattggtttattactggatatgactttaagagacatcgaacgcgttctttac
tttgaagcatttgttgttgttgagcctggcatgactgaacttgagcgtggccaattgctt
aacgatgaagcttatcttgatgctatggagcaatacggtgatgaatttgatgcacgtatg
ggtgcagaggcaattcgtgatctattacgccaagttagccttgaagatgaaatcaaaaat
ctacgtgaagagttacctactacgaactctgaaactaagattaagaagattactaagcgt
ttaaaactattagaagcattttatgaatcaggaaataaacctgagtggatgattatggac
gtattgccagttcttccaccagatttaagacctttagtgcctctagatggtggtcgcttt
gctacttcggatcttaacgatctttatcgtcgcgtaattaaccgtaataaccgattgaag
cgtttacttgatttgaatgctccagatattatcgtacgtaacgaaaagcgtatgttacaa
gaatctgttgatgccttattagataacggtcgtcgtggtagagcaattactggtactaac
aagcgtccacttaaatcattggccgatatgattaaagggaagcaaggtcgtttccgtcaa
aaccttcttggtaagcgtgttgactattctggtcgttccgtaattgtggtaggtcctaca
ttaaaattacatcaatgtggtttaccgaaaaaaatggcacttgagctatttaagccgttt
atcttcagtaaattagaatttagaggtttagctacaacaattaaagccgccaagaaaatg
gtagagcgtgaagagtctgtagtttgggatattttagatgacgttattcgtgaacatcca
atcctgttaaaccgtgcaccaactctgcatagattaggtattcaggcattcgaacctgta
ctaatcgagggtaaagcaattcaattacacccattagtttgtacggcatataacgcggac
ttcgacggggaccaaatggcggttcacgttccactgactttagaagctcagttagaagct
cgttcgttaatgatgtctaccaacaatattttatcaccagcaagcggtgagcctattatt
gttcctagccaggacgtagtattaggtttatattacttaactcgtgaaaaagttaatgct
ttaggtgaaggcaaaatatttgttagtgcccaagaagcgcagaacttctacgaatcaaac
catcttgatattcatgcgaaaattaaaattcgtatggctaaagagaatggtgaagaaggg
tatcatctggtagaaactacagtgggtcgtgcaattcttgctgaagttttacctaaaggt
atgccttttgctacaattaaccgcaccatgactaagaaaatgatttccaaagttattgac
ggttgctaccgtatctttggcttaaaagaaacggttatgttcgctgataagctcatgtat
acagggtttaaatatgcgactcgttctggaatatcgattggtatcgaagatatggagatt
cctgacgataaagcaagtattattgagcatgctgataacgaagttcgtgagatcgaatcg
caattccgttctggtttagttactaacggtgagcgttataacaaagtaatcgatatttgg
tcgcgtactaacgagttagtcgctaaatcgatgatggctaagattgctactgaagcagtt
actgatgctaaaggcaacgaaacacgccaagaatcatttaacccaatctttatgatggct
gattctggagcgaggggttctgcggctcagattagacagctagccggtatgcgtggtctg
atggcggctccagatggctcgatcattgagactcccattacagcgaacttccgtgaaggt
ctgaacgtattccagtacttcatttcaactcacggagcgcgtaaaggtttggccgatacc
gcattgaaaacagcgaactctggttacttgactcgtcgtttagttgatgttgcccaagac
gttgttattacagaagacgattgtggtgtagaaactggtattctaatgcaacctcttatt
gagggtggagatattgtcgaaccactacatgagcgggtattaggtcgtgttgttgctgca
gacgtttatattccaaatcaaactgagcctgtggttactgcaggtactttattggatgaa
gattgggttgagcagttagagaagcagagtgtggaccaagttatggttcgttcgccaatc
acctgtctaacccgatttggactctgtgctaaatgttatggtcgtgatctagctcgagga
cacttggttaacactggggaagcggtaggtattattgcggcacagtcaatcggtgaacct
ggaactcagttgaccatgcgtaccttccacatcgggggagctgcgtcaagagcaacagct
gctaacaatattcaaattaagactaaaggggttattcgtttacataacattaagacggta
actcatgagaataaaaacctggttgcggtatcgcgctcaggggaagtgaccattgttgat
gagttcggacgtgagcgtgagcgttataagctaccttatggtgcggtgatttcggttcaa
gataactctcctgttgatgcaggtcaggtaattgcaacttgggacccacatactcaccca
gttatttctgaagtgagtggttacttaaagttcgttgacttaatcgacggtattactatg
aacagacaaaccgacgaattgaccggtttaagtaatattgtaattatcgatgcgaaacaa
cgtagtgcagcaggccgtgatttacgtcctatggttaaattagtaactgctgatggagat
gatatcttcctggctggtactaacgttcctgcacaatactacttacctgtagatgcgatc
gttaactttgaagatggcggtctagtaggtattggggacgtcattgcacgtattcctcaa
gaacgctctaaaacacgcgatattaccgggggtcttccacgggtagctgacttgtttgaa
gcgcgtaaaccaaaagattctgcagttatggcggaagtatctggattggttaactttggt
aaggaaactaaaggtaaacgtcgattaataatcaatgtttctgaagatcaatgtcatgag
gaattgataccaaaatggcgtcatatctctgtgtttgaaggggagcacgtagagcgcggt
gaactcatcgctgaaggtgcactcaatccacatgatatattacgcttattaggtgtgggc
gcattggcaaattatattgttaacgaagtacaagacgtatatcgtttacaaggtgtgaaa
attaatgacaagcacatcgaagtaattgttagacaaatgctacgtaagcgagttattact
tttgcaggtgattctaaattcctggctggtgagcaaatcgaagaaagcgctatgctgcaa
gaaaatgataagcttattgctgaaggaaaacagcctgcccgtggtacgccaattttattg
ggtattactaaggcatccttggctacggaatcatttatttcagctgcatcattccaagaa
acaactcgagttctgacggaagctgctgtaagtggtaaaattgatgatttacgtggatta
aaagaaaacgtgatggttggtcgcttgattcctgcaggaacaggttatgcttatcatcaa
agccggaaggcaaaaagagctaaggctgcagctggtgagcatgtaatgcacactgttact
gcgagtgatgttgaacatgcgttaagcgaagcattaaacgcagataatcaagaacactag

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