Legionella lytica: J2N86_10725
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Entry
J2N86_10725 CDS
T08304
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lly
Legionella lytica
Pathway
lly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J2N86_10725 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lly03400
]
J2N86_10725 (mfd)
Enzymes [BR:
lly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J2N86_10725 (mfd)
DNA repair and recombination proteins [BR:
lly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J2N86_10725 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
AAA_22
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
USQ15192
LinkDB
All DBs
Position
2438399..2441845
Genome browser
AA seq
1148 aa
AA seq
DB search
MNMETLLYQNTQTKQIWGQLHGSSLALALAEYCQKTPGIKLLIAQDNLSANQLQSELEFF
LNPKQSEQELLFFPDWETLPYDQFSPHQDIISERLYTLSRIQQVSDAIIITSANTLMHRL
CPPEFLNQYALMLKKGQKLDLEAFRNQLQQSGYHCVNKVLEHGEFALRGSIIDVYPMGST
RPFRIELFDDEIESLREFDTETQRTIEKIPYINVLPAREFPLNEQSQTLFRRAFRELFPG
NPSNCPIYEAISHGQFPAGIEYYLPLFFEKTVTFFDYLPQDAKVCLIENIQDNAEQFWQE
LTGRYEQRRYDISRPILEPTACFLNPSELLTKANEYQQLRLFHTPSSKKGAVTNFDITPA
PELPIDRKTQEPLSRLREYCTDTSRRYLIVVESAGRREVLLDLLKPSGILPKIQSSWHDF
IKDTAPINITTGALVTGCELTQSNTVLIVESQLFGEQSTPQRRSAQKTVDPDLIIRDMAE
LRLGAPVVHLQFGVGRYQGLQHIESNGTAREFLVLTYAGEDKIYVPVTSLHLISRYTGVD
SEHAPLHKLGSDQWQKERKKAAEKIHDVAIELLDLYAKREAQPGHQYEVSHNEYARFASA
FPFTETVDQLQAIDQIMNDMSSTKPMDRLICGDVGFGKTEVAMRAAFIAVQNNKQVCVLV
PTTLLAGQHFESFRDRFADFAVNIELLSRFRSAKETEAVQASLKSGKVDIVIGTHKLFQS
SIAFKNLGLLIIDEEHRFGVKQKEHIKALRTHVDILSMTATPIPRTLNMAMAGIRDISLM
TTPPAKRLAIKTFWQEKKDPTIREAILREILRGGQVFFLHNNVETIERISQDLQTLVPEA
KVRTAHGQMRERELERVMSEFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQL
HQLRGRVGRSHHQAYAYLLTPNEKSLTSDAIKRLEAIVSLEDLGAGFTLATHDLEIRGAG
ELLGAEQSGNMHAIGFSLFMEMLDKAVSDLKAGKIPELSAPMYQGPEIDLRISAIIPEDY
IGDIHNRLIMYKRISNAKDKQQLHELQIELIDRFGLLPPPVKHLLLITDLKLKAQQMGVL
KISAGAQQGKIDFNETPSIDPGVLISLIQVHAKRYQMEGPQRLRFTLDGTTPEERIFEIH
SLLDKLMT
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
ataaacatggaaacattactctaccaaaacacacagaccaaacaaatatgggggcaactc
catggcagtagcttagctcttgctttagccgaatattgccaaaaaacgccgggcattaaa
ttactcattgctcaggacaatctcagcgccaatcaattgcagtctgaattagaattcttt
ttaaatccaaaacaatcagagcaagaacttttatttttccctgattgggaaaccttaccc
tatgatcaattttctccacatcaagatattatttcagaacggctctataccttaagccgc
attcagcaagtcagcgatgccattattattacttctgcaaacactttaatgcatcgactc
tgtccccctgagtttttaaatcaatatgccctaatgcttaagaaggggcaaaaactggat
ctggaagccttcagaaaccagctgcagcaatcgggttatcattgcgttaataaagtatta
gagcatggtgagtttgccttacgcggctcaattattgatgtatatcccatgggctctacc
cgaccctttcgtatcgagctttttgatgatgaaatcgaaagtttaagggagtttgatacc
gaaacccaacgcactatagagaaaataccttacataaacgtattaccagcacgtgagttt
ccactcaatgagcaaagccaaaccctatttcgcagggcatttcgtgaattattcccggga
aatcccagcaactgccccatctatgaagccattagtcatgggcaatttcctgctggcata
gaatactatctaccactattttttgaaaaaaccgtcaccttttttgattatttgcctcaa
gatgccaaagtttgtttgattgaaaacattcaagataatgccgaacaattttggcaggaa
ttaaccgggcgttatgaacaacgccgttatgacatcagccgccctattcttgagccaaca
gcatgctttcttaatccatctgagcttttaaccaaagctaatgaatatcaacaattgcgt
ttattccatacaccgagtagtaaaaaaggtgcagtaacgaattttgatattactccagct
cctgaattgcctattgatagaaaaacacaagagccgttgagccgtttacgtgaatactgt
acggatacctctcgccgttatctaatcgtggtagaaagtgcgggacgccgcgaagtatta
cttgacctgcttaaacccagtggcatccttcctaaaattcaaagcagttggcatgatttt
atcaaggataccgctccgattaatatcaccaccggagccttggttaccggttgtgaatta
acgcagagcaatacggttttaattgtagagtcgcagctatttggggagcaaagtactcct
caacgacgtagtgcacaaaaaacggttgacccggatttaattatccgagatatggctgaa
ttgcgtttaggtgccccagtcgttcatttacaatttggcgtgggacgttatcagggatta
cagcacatcgagagcaacggtactgccagagaatttttagttttaacttatgccggtgaa
gataaaatttatgttccggttacctccttacatttaattagccgctatacaggtgtagac
agcgaacatgctcccttgcataaattgggttcggaccaatggcaaaaagagaggaaaaaa
gctgctgaaaaaattcatgatgtggccatcgaacttcttgatctctacgcgaagcgagaa
gcacaaccaggccatcaatatgaagtcagtcacaacgaatatgcacgctttgccagtgcc
tttccctttaccgagactgtagatcagctgcaggctatagaccaaatcatgaatgacatg
tcttcgaccaaacccatggaccgcttgatttgcggtgatgtaggttttggtaaaactgaa
gtcgccatgcgcgcggcatttattgctgtgcaaaataacaaacaagtttgtgtactggta
ccaactaccctacttgccgggcaacattttgaatcattcagagatcgttttgctgatttt
gcagtgaacattgaactgctgtcgcgttttcgctcagccaaagaaacagaggcggtgcaa
gcctcattaaagtccgggaaggtcgacattgttattggtacgcacaagctatttcaaagc
tctattgcctttaaaaatctgggcctattaattatcgatgaagaacaccgttttggcgtt
aagcaaaaggagcacatcaaagcattgcgtactcatgttgatattttatcaatgacggcg
acccccattccaagaacgctgaatatggcaatggcaggaatccgtgatatatcactgatg
actactccgcccgccaaacgtttggcaattaaaaccttctggcaggaaaagaaagatccc
accattcgtgaagcaattttgcgtgaaatattaagaggcgggcaggttttcttcttgcac
aataatgtggagaccattgagcgtattagtcaggatctacaaacattggttcctgaagcc
aaggttcgtactgcgcacggtcaaatgcgtgagcgcgaattagagcgggtaatgtctgag
ttttatcaccaccgctttaatgtattggtatgcaccaccattattgaaacgggaatcgat
attcctacagccaatactatcattattgatcgcgcagataaatttgggttagctcagtta
catcaattacgtggtcgtgttggccgttcgcaccatcaggcttatgcttatttattaacc
ccaaatgaaaaatcattaacttctgacgcaataaaacgtttagaagctattgtatcctta
gaagacctaggtgccggttttaccttagcaacccatgatttggaaattcgcggtgcgggt
gaactgttaggtgcagagcaaagcggtaatatgcacgcaattggctttagcctattcatg
gaaatgctcgacaaagctgtcagcgacttaaaggcaggaaaaatacccgaactgtctgcc
ccaatgtatcaaggtcctgaaattgacttgcgtattagtgcaattatccctgaggattat
attggtgacattcataatcgactcattatgtataagcgcatttctaatgccaaagacaaa
caacaattgcatgagctgcaaatcgagttaattgaccgctttggtttattacccccacct
gtgaaacatttactgttaatcactgatttaaaattaaaagcccagcaaatgggcgttcta
aaaatcagcgccggcgcacaacaaggcaaaatagactttaatgaaaccccctcaattgat
cctggagttttaataagtctgattcaagtgcatgccaaacgctatcaaatggaaggccca
caacgtttacgttttaccttggatggtacgactccagaggagcgtatttttgaaattcac
agcttacttgataaattaatgacataa
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integrated database retrieval system
