Novilysobacter luteus: LYB30171_02176
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Entry
LYB30171_02176 CDS
T08395
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
llz
Novilysobacter luteus
Brite
KEGG Orthology (KO) [BR:
llz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llz03019
]
LYB30171_02176
Enzymes [BR:
llz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LYB30171_02176
Messenger RNA biogenesis [BR:
llz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LYB30171_02176
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
AAA_19
AAA_22
WHD_HA2
AAA_23
nSTAND3
SRP54
Cas3-like_C_2
AAA_25
AAA_30
NACHT
nSTAND_NTPase5
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CAG4976430
UniProt:
A0ABN7QZ95
LinkDB
All DBs
Position
1:complement(2310411..2314397)
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AA seq
1328 aa
AA seq
DB search
MNPKDPPAKTTSRRPPLSPALRQAREAIDRGLSRDRGRLHGLWSRWRGRPDDAEAQAAFE
RALAESVVRRESRAANLPAAPVDPSLPIAAEADRIVELIRAHPVVVIAGETGSGKTTQIP
KLCLAAGRGAAGMIGCTQPRRIAARAVAKRVAEELQTPLGGAVGYQVRFNENVGEQTAVK
FMTDGILLAEIQSDRWLSRYDTILIDEAHERSLNIDFLLGYLKQLLQKRRDLKVIVTSAT
IDTARFATHFDDAPVVEVEGRSYPVEVRYRPLEGEGDREGERTVNDAIVAACDEINREDP
RGDVLVFLPGEREIRDAHQALERRKYRHTEVLPLYARLSVRDQDRVFNPGPQRRIVLATN
VAETSLTVPRIRYVVDPGLARVKRYSPRGKLDRLHIEPISQASANQRKGRCGRVSEGTCY
RLYSEADFQSRPEYTDPEIRRAALAGVILRMLALGLGDIERFPFLEPPDPRAIADGWQQL
AELGAVDESRTMTATGRLMARMPVDVKLARMLVAANARGCLREMLVIASFLGIQDPRERP
ADQRAAADNAHAHFVDYSSEFVGTLKLWTAYQDAHEELTQSQLRRWCEKHFLGFLRMREW
RELHRQLKLMADDLGWQQGPPLAELDAGAFANLHRALIAGLPTQIGHRQPGPEKKPGEKN
PGERRPAAVYEGPRGRRFGLFPGSWLIRKPPPWVLSATLLDTEKVWAMTNAAIEPQWAID
ELPHLLARRHFDPRWSRAQGRVLGSEQVSLFGLVLAPKRPIHYGGLYPEESRAIFARDAL
VTGEINTRAVFLKRNLATLEKAREEEAKQRRAGIVVDEDWMARWYLDRLPPHVHNAQALD
AWFNKLPPPSKSALEWSLEDLLIGDETDASRFPPVIGLGDARLAVKYRFDPGAPDDGMTV
AVPLHLLNALDPVRLGWLAPGFVANKAAALIKSLPKAQRRNFVPAPDFARAFAEAHPGPE
ADTFTGTLARFLHKVTGAEVAGVDFDEAALEPHLRANLRLHDRDGRTVLAESRDLDDLRA
RFGERAARAFAAHAADGMGQRGLVEFPDTPIPASVPGAAGVPAYPALHDDGDSVSLQVHA
ERDTALRHHPRGVRRLLWLALADKRKQARKQLPVSPRTGLLYAAIESAAPRQTGERDGDR
LRGDIVDGAFASLVADGLGDIRDAEAFVARRDAVARQLFPESMERLHQAETILAAVAEAR
GKLESPLMGWASGNLDDMRAHLAALTPPGFLRDVPASALAGYPRYLKALALRGERALRDP
TRDQARMLELKPFVDALAAAGARGEADAPEWQALRWELEELRVSLFAQELGARGVSPKKL
ATRLARIG
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctaaggatccgcccgctaagaccacgtcacggcgcccgccgctgtcgcccgcg
ttgcggcaggcgcgcgaggcgatcgaccgtggcctgagccgtgatcgtggccggctgcac
gggctgtggtcgcgctggcgcggccgtcccgacgacgccgaggcgcaggctgcgttcgag
cgggcgctggccgagtcggtggtgcggcgcgagtcgcgggcggccaacctgcctgcggcg
ccggtcgatccgtccctgccgatcgcggccgaggccgaccgcatcgtcgagctgatccgg
gcgcacccggtcgtggtgatcgccggcgagaccggttcgggcaagaccacccagatcccc
aagctgtgcctggccgccggccgtggggcggcgggcatgatcggctgcacccagccgcgc
cggatcgccgcgcgggcggtcgccaaacgcgtggccgaggaactgcagacgccgctgggc
ggggcagtgggctaccaggtccggttcaacgagaacgtcggcgagcagaccgcggtcaag
ttcatgaccgacggcatcctgctggccgagatccagtccgaccgctggctgtcgcgctac
gacacgatcctgatcgacgaggcgcacgaacgcagcctcaacatcgacttcctgctcggc
tacctcaagcagctgctgcaaaagcgccgtgacctcaaggtcatcgtcacctcggcgacg
atcgacaccgcacgcttcgccacacacttcgacgatgccccggtggtcgaggtcgaaggc
cgcagctaccccgttgaagtgcgctaccggccgctggaaggcgagggcgaccgcgaaggg
gagcgcacggtcaacgacgcgatcgtggccgcgtgcgacgagatcaaccgggaagacccc
cgtggcgatgtgctggtgttcctgcccggcgagcgcgagatccgcgacgcccaccaggct
ctggagcgtcgcaagtaccgccacaccgaagtactgccgctgtacgcacgcctgtcggtg
cgcgaccaggatcgcgttttcaaccccggcccgcagcgccgcatcgtgctggcgaccaac
gtcgccgagacctcgctgacggtgccgcgtatccgctacgtggtcgatcccgggttggcg
cgggtcaagcgctacagcccgcgcggcaagctcgaccggctgcacatcgaaccgatcagc
caggccagtgccaaccagcgcaagggacgttgcgggcgcgtgtcggagggcacctgctac
cgcctctacagcgaggccgacttccagtcgcggcccgagtacaccgaccccgagatccgc
cgcgccgcgctggccggggtgatcctgcggatgctggcactcggcctgggcgacatcgag
cgcttccccttcctggagccaccggacccgcgcgcgatcgccgacggctggcagcagttg
gccgaactgggcgcggtcgacgaatcccgcacgatgaccgcgaccggccggctgatggca
cgcatgccggtcgacgtgaagctcgcccgcatgctggtcgccgccaatgcgcggggctgc
ctgcgcgagatgctggtgatcgcctcgttcctcggcatccaggacccccgcgagcggccc
gcggaccagcgcgccgcggccgacaatgcccacgcccatttcgtcgactacagctcggag
ttcgtcggcacgctgaagctctggaccgcctaccaggacgcgcacgaggagctgacccag
tcgcagttgcgccgctggtgcgagaagcacttcctcggcttcctgcgcatgcgcgaatgg
cgtgagctgcaccgccagctcaagctgatggcggatgacctcggctggcagcaggggccg
ccgctggccgagctcgatgccggtgcgttcgccaacctgcaccgcgcattgatagccggg
ttgccgacccagatcggccaccgtcaaccgggccccgagaagaagccgggcgagaagaac
ccgggtgagcgccggccggcggcggtctacgagggcccgcgtgggcgccggttcgggctg
tttccgggctcctggctgatccgcaagccgccgccgtgggtgctgtcggccacgctgctc
gacaccgagaaggtctgggcgatgaccaacgccgcgatcgagccgcaatgggcgatcgac
gagctgccgcacctgctcgcccgccgtcacttcgacccgcgctggtcgcgtgcgcagggt
cgcgtgctcggcagcgagcaggtcagcctgttcgggctggtgctcgcgcccaagcgcccg
atccactacggcggcctgtaccccgaggagagccgggcgatcttcgcccgcgacgcgttg
gtcaccggcgagatcaacacccgcgcggtgttcctcaagcgcaacctggcgacgctggag
aaggcgcgggaggaggaagccaaacagcgccgcgccggcatcgtggtcgacgaggactgg
atggcgcgctggtatttggaccggctgccgccgcacgtgcacaacgcgcaggcgctggac
gcctggttcaacaagctgccgccgccgtcgaagtccgcgctggaatggtcgctcgaggac
ctgctgatcggcgacgagaccgacgcgtcgcggttcccgccggtgatcggcctgggcgac
gcgcggctcgcggtgaagtaccgcttcgaccccggcgcgccggacgacggcatgaccgtc
gcggtgccgctgcacctgctcaacgcgctcgacccggtccggctgggctggctcgcgccg
ggcttcgtcgccaacaaggcggcggcgctgatcaagtcgctgcccaaggcgcagcggcgc
aacttcgtgcccgcgccggacttcgcccgtgcgtttgccgaggcgcaccccgggccggag
gccgacaccttcaccggcacgctggcgcgcttcctgcacaaggtcaccggcgccgaggtc
gcgggtgtcgatttcgacgaggcagcactggagccgcacctgcgtgccaacctgcgcctg
catgaccgtgacggccgtacggtgctggccgaatcgcgcgacctggatgacctgcgggca
cgcttcggcgagcgggccgcgcgtgcattcgcggcccatgcggctgacggcatgggccag
cgcgggctggtcgaattccccgacacgccgatcccggccagcgtgcccggtgccgccggc
gtgccggcctacccggcactgcacgacgatggggacagcgtctcgttgcaggtgcatgcc
gagcgcgacaccgcgttgcgccaccatccccgcggcgtgcgccggttgctgtggctggcg
ctggccgacaagcgcaagcaggcccgcaagcagttgccggtctcgcccaggaccggcctg
ctgtacgcggcgatcgaatcggccgcgccgaggcaaaccggcgaacgcgatggcgaccgc
ctccggggcgacatcgtcgacggcgcgttcgcatcgctggtggccgacgggcttggcgac
atccgggacgcggaggccttcgtggcgcggcgcgacgcggtcgcgcggcagctcttcccc
gagtcgatggaacgcttgcaccaggccgagaccatcctcgccgcggtagccgaggcgcgg
ggcaagctggagtcgcccctgatgggctgggccagcggcaacctggacgacatgcgcgcg
cacctcgcggcgctgacgccgcccgggttcctgcgcgacgtgccggcctcggcgctcgcc
ggctacccgcgctatctgaaggcactggcactgcgcggcgaaagggcgctgcgcgacccg
acccgcgaccaggcacggatgctggagctcaagccgttcgtggacgcgctggccgcggcc
ggtgcacgcggcgaagccgacgccccggagtggcaggcgctgcgctgggagctcgaggag
ctgcgcgtctccctgttcgcgcaggaactcggtgcgcgcggggtctcaccgaaaaaactg
gcgacgcggctggcgcggatcggttga
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