Leishmania major: LMJF_14_0010
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Entry
LMJF_14_0010 CDS
T01014
Name
(RefSeq) putative exosome complex exonuclease
KO
K03679
exosome complex component RRP4
Organism
lma
Leishmania major
Pathway
lma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMJF_14_0010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lma03019
]
LMJF_14_0010
Messenger RNA biogenesis [BR:
lma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
LMJF_14_0010
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
LMJF_14_0010
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
RRP40_S1
YlbD_coat
Motif
Other DBs
NCBI-GeneID:
5650355
NCBI-ProteinID:
XP_001687601
UniProt:
Q4QFY3
LinkDB
All DBs
Position
14:3071..3994
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AA seq
307 aa
AA seq
DB search
MSSSVVIVGDSICGGDGDQKLSTSHDEVYLRGFNTFAGNNPSDRALLHEGAGEVVAAISG
HIEVTERVISVKGLLPRYQPEIGDVVVGRIVEVSGNKWHVDVNSTQTAIMLLSSVTEPGG
ILRRRGRGDELGMRQIFDQDDLVAAEVQRISPDGVMSLHTRAADKYGRLSGLGILVSVRP
SLVKRAKHQFVELADYSTQLIIGMNGNIWICSVQPSTSDAEETEHATDARQNVARVANCI
KALGAAQVQIHPASIEASVAASLDAGLSVFDVSLPKNRDALVARVADMVGMQHRRPTGGG
ACARTLV
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagcgttgtgattgtgggggactccatctgtggaggcgatggggatcagaag
ctgagcacgagccacgacgaagtttatcttcgcggatttaacacctttgcgggaaataat
cccagtgatcgggctctgctccacgaaggggctggcgaggttgtggctgccatcagtgga
cacatagaggtgaccgaacgcgtgatttcggtgaagggtctgctgccgcggtatcaaccg
gaaatcggcgatgttgtagtcgggcgcatcgtggaagtgtcaggaaacaagtggcacgtc
gatgtgaactcaactcaaacggcaattatgctgctttcaagcgtaacggagcctggaggt
atactgcggcgccgaggccgcggtgacgagctcgggatgcgccaaatctttgaccaagat
gatctagttgcggcagaggttcaacgcatttctcccgatggtgtgatgtcactgcacaca
cgtgcagcggataaatatggtcggctgtcgggactgggcattttggtgagtgttcgtccc
tctttggtgaaacgagcgaagcaccagtttgtagaactcgcggactacagcacacaactg
atcattggcatgaatggtaacatatggatttgctcggtgcaaccctctactagcgacgcg
gaggagacggagcacgccacggacgcacgtcaaaacgtggcgcgtgttgcaaactgcatc
aaagcattaggggcggcgcaagtccagattcacccagcatcaatagaggccagtgttgcg
gcgtcattagatgcaggcttgtcggtgtttgatgtttcgcttccaaagaacagagatgct
cttgtggcacgcgtcgctgacatggtgggaatgcaacaccgtcgccctactggcggcggc
gcttgcgcgcgaacgctggtgtag
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