Leishmania major: LMJF_16_1350
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Entry
LMJF_16_1350 CDS
T01014
Name
(RefSeq) putative DNA-directed rna polymerase I largest subunit
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
lma
Leishmania major
Pathway
lma03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lma00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LMJF_16_1350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lma03021
]
LMJF_16_1350
Enzymes [BR:
lma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LMJF_16_1350
Transcription machinery [BR:
lma03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
LMJF_16_1350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
Motif
Other DBs
NCBI-GeneID:
5650686
NCBI-ProteinID:
XP_001682216
UniProt:
Q4QEN2
LinkDB
All DBs
Position
16:complement(557621..563050)
Genome browser
AA seq
1809 aa
AA seq
DB search
MSLTTAFPFHAYVGDLRTRTVHERKSGVSLSLMTSEDMARLAFVEVRVRCGQEDRLAPWT
PAVRRDGTHATFYDTRMGNFDARTFPPQACSTCCNTLNSKYGNERCQGHYGYISMPRRYP
NDPNRSQERLSVINPHLAQEVEQLLQAECFFCHRFRVPEFDVTRYQQALRLVDSGLIGEA
LRFLDMVANAHGQDMRSRRRRDANETVINDIPLMLDHVDTLLRRRGAAAPPLPGVTSGEA
GAHGNANGDAGAAGALTHVDGSDDGFRKPVLDVRNEICKQALRSFREFGNVCSHCQGISP
RITTKNGHLFFFFNKKNADFNVANGGVTTAQLREWEEMNRRQGRSHTYFRTSWVREHIKQ
LCQRESAILAALFPHLGEATLHMPYACSLPSMYYYKVFFVDKLLVPPLPLRLSSGVQISE
SGGIIPDTGTRALSDVLEFVEQIEAYYVLANNSTPERNLVSAAQEIAQEHNLRNLQAKVT
EVYTDVLEGFAKKEGLFRMHMMGKRVNQACRSVISPDYLVEPNEVLLPRPFARALTFPEL
VSSYSPARMMFLKRCVMNGPDVYPGATHLEIGLPSGETRFVDLHVPELIRRQHAMKYFAM
AQNGSLTVHRHILDGDHLIFNRQPTLHKVSMMAYRAKVLSGLKTLRFHYVNGSSYNADFD
GDEMNIHVVQSLEAKAELECLMDANLNYLVPTSGKPIRGFIQDHVVAGVLLTLRDNFLPH
HTFVQFVYNGIAPYMQKQGKPLSALATLTELIPVPAVLKPRPLWTGKQLISVIVHYVTGV
VESRGGAPRSNGVSMHGTSLIQPSTYTTTDPHTGELVTASRKCMEDDHVQFFESELITGI
LCKNQLGSSNLSVVHVIHEIYGPHMVGELFGALGRVLSMSLQREGFSIGMDDMILLQEER
RTALLRELDSAPLNLPDDEARVMPVIMGMATSLQKEFVPGRMLRPFPHNQLLTMTMSGAK
GSNTNAIQMSLGLGQQLFDGRRVKRMNSGKTLPPFFVAEKRARSLGYAIGRFTSGIRPAE
YTFHAMAGRDGLIDTAVKTSRSGHLQRCLVKGLESLVVQWDHSVRDANGSVIQFLYGGDG
LDPMRTSSLQAWEVVKDNCIDLGRKMNVNTGVVTGEEAAEEAASRNSQGKRERAHEAAAA
MRAAQRALLEAEAQRDPLPAHCKASLGTYLETKAQYPLFKKVSQVARWVKNGVLNEKLRE
KREESIRYYRDVMTELTTRRRVRAYCDAGEPVGLLAAQAAGEPSTQMTLNTFHSAGSTVT
HVTEGIPRLRELLIYASVQKVAIVVPVEKATEVDEEAISRILQAGVATRLTDCMARVPAA
VTAGADSGAAARAQTTPGYHYRVTRSAEGTQVTVALLFSKTLLMQKQHAMCMSTAEHLQS
FTQTLKNFARQVVTALRGRSKDEREGAGGPLRGTTQDPSSQMDDGTAAAGGGMSDNEDDM
DERSTQMNTPALGAASAPSVAGSELGRDDMIPERDDNGGSSGSDEDDYDEAVDAADSSRR
RKGGKGNSPLRKKSRAEEDDNEEDDEDVNGLFWKSSSNGGTNSEAAAAASGKVSYDCFPT
VCVMYGNKKYRVEIAPLLREAATRDGVVPLPEDLFVVNVSIQTSDQVVTVIPDVLESALA
QQTFPSWLTQFDSVTYTRKAEDPTSGEMVFQGSSATIRSVTAFLALFTVRARAIKLQKAR
STDIRDMCTSFGVESGYTALFDELEKLFKRYSVDYHHLTLIADAATHRGVWENYNFTGVI
SHSASPLFQMTFASSKRFLHTALTRGIGDELNSISSAIMVGERPRVGTALVKVGQDPQIL
RDVIEKNFA
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcaccaccgccttccctttccatgcgtacgtgggcgacctgcgcacgcgcacc
gtccacgagcgcaagagcggcgtctccctctccctcatgacctctgaggacatggcgcgc
ctcgcctttgtggaggtgcgcgtgcgctgcgggcaagaggatcggctggcgccatggaca
ccagctgtgcggcgcgatggcacgcacgccacgttctacgacacacgcatgggaaatttc
gacgcacgcacgttccctccgcaagcgtgctcgacgtgttgtaacacgctcaactccaaa
tacggcaacgagcgctgtcagggccactacgggtacatcagtatgccgcgtcgctacccg
aacgacccgaaccggtcacaggagcgcctcagcgtcattaacccgcaccttgcccaggag
gtggagcagctgctgcaagccgagtgcttcttctgccaccgcttccgtgtacctgagttt
gacgtgacgcgctaccagcaggcactgcgcctcgtcgattccgggttgattggcgaggcg
ctgcggttcctcgacatggtggcgaacgcacacgggcaggacatgcgcagtcgacgccgt
cgtgacgccaacgagaccgtcatcaacgacatccctctcatgctggatcacgtcgatacg
ctgctgcgccgccgcggagccgctgcaccgcctctgccgggggtcacgtcaggcgaggcg
ggtgcgcacggcaacgccaatggggacgccggcgctgctggcgcgttgacgcacgtggat
ggcagcgatgacggcttccgcaagccggtcctcgacgtccgcaatgagatctgcaagcag
gcgctgcgcagcttccgcgagtttggcaacgtgtgctcgcactgccaagggatctcgcct
cgcatcacgacgaagaacggtcatctcttcttcttcttcaacaagaagaacgccgacttc
aacgtggcgaacggcggggtgacgacggcgcagctgcgggaatgggaggagatgaaccgt
cgccagggccgcagtcacacgtacttccgcacgtcgtgggtgcgagaacacatcaagcag
ctgtgccagcgcgagtccgccattctcgcggctctcttcccgcatctcggtgaggccacc
ctacacatgccgtacgcctgctcgctcccgtcgatgtactactacaaggtcttctttgtg
gacaagctgctcgtgccgccgctgcccctgcgcctgtcctcgggcgtgcagatctccgag
tccggcggcatcatccccgataccggcacacgtgccctgtctgacgtgctcgagttcgtc
gagcagatcgaggcgtactacgtcctcgcgaacaactcgaccccagagcgcaacctcgtc
agcgcagcgcaagagatcgcgcaggagcacaacctgcggaacctgcaggccaaagtgacg
gaggtgtacacggatgtgctggagggctttgcgaagaaagagggcctgttccgcatgcac
atgatgggcaagcgtgtgaaccaggcgtgtcgtagcgtcatctcacccgattacctggtg
gagccgaacgaggtgctgctgccccgccccttcgcccgcgcgctgacattcccggagctg
gtgagcagctactcgccagcgcgcatgatgttccttaagcggtgtgtcatgaacggcccg
gatgtgtacccgggcgccacacacctagaaattggcctgccgagcggcgagacgcgcttc
gtggacttgcacgtgccggagctgattcggcggcagcacgccatgaagtacttcgcgatg
gcgcagaacgggtccctcacggtccaccggcacatcctcgatggcgaccacctcatcttc
aatcgccagccgaccctgcacaaggtatccatgatggcgtatcgcgccaaggtgctgtcc
gggctgaagacgctccgcttccactacgtcaacggcagctcgtacaacgccgacttcgac
ggtgatgagatgaacattcacgttgtgcagagcctggaggcaaaggcggagctcgagtgc
ctgatggacgccaacctcaactacctcgtcccgacgtccggcaagccgattcgcggcttc
attcaggatcacgtggtcgccggcgtgttgctgacgctccgcgacaatttcctgccgcat
cacacctttgtgcagtttgtgtacaacggcatcgcgccgtacatgcagaagcagggcaag
ccgctcagcgcgctcgcaacgctaacggagctgattccggtgcctgcggtgctaaagccg
cgtccgctatggacgggcaagcagctcatctccgtgattgtgcactacgtgaccggcgtg
gtggagagtcgtggcggcgcgcccaggagtaacggcgtcagcatgcacggcacctccctc
atccagccgagcacctacaccaccaccgacccccacaccggcgagctagtcactgcgtca
cgcaagtgcatggaggacgatcacgtgcagttctttgagagcgagctcatcaccggcatc
ctatgcaagaaccagctcggctccagcaacctctccgtcgtgcacgtcattcacgaaatc
tacgggccgcacatggttggcgagctcttcggcgcgctcggtcgcgtgttgtcgatgagc
ctgcagcgcgaaggcttctccattggcatggatgacatgatcctcttgcaggaagagcgg
cgtacggcgctgctgcgcgagctggacagcgcgccgctcaacctccccgacgacgaggcg
agggtgatgcccgtgatcatggggatggcgacaagcctccagaaagaattcgtgccgggg
cgcatgctgcggccttttccacacaatcagctgctcaccatgaccatgtccggtgcgaag
ggcagcaacacgaacgcgattcagatgtcgctcggtctcggccagcagctcttcgacgga
cgtcgggtgaagcgcatgaactcgggcaagacgctgccgccgtttttcgtcgcggagaag
cgagcccgctcgctgggctacgcgatcggccgctttacctccggtattcgaccggcagag
tacacctttcacgccatggccggccgtgatgggctcatcgacacggccgtcaagacttcc
cgctctggtcacctgcagcggtgcctagtcaaaggcctggagagcctcgtcgtgcagtgg
gaccactccgtgcgcgacgccaacggcagcgtcatccagttcctctacggcggcgacggg
ctcgacccgatgcggacctcgtccctgcaggcgtgggaggtagtcaaggacaactgcatc
gacctcggtcgaaagatgaacgtgaacaccggcgtggtgacgggcgaggaagcggccgag
gaggcggcgtcgcgcaacagccagggcaagcgcgagcgcgcccacgaggcggccgcggcg
atgcgtgcggcgcagcgtgcgttgctcgaggcggaggcacagcgcgacccactccccgcc
cactgcaaggcgagccttggcacgtacctggagaccaaggcgcagtatcctctcttcaag
aaggtttcgcaagtcgcgcggtgggtcaagaacggcgtcctgaacgagaagctgcgcgag
aagcgcgaggagagcatccggtactaccgcgacgtgatgacggagctcacgacgcggcgg
cgggtgcgggcgtactgcgacgctggagagccagttggcctcctggcggcgcaggccgcc
ggtgagccgtcaacgcagatgacgctcaacactttccacagcgccgggtcaaccgtgacg
cacgtgacggagggaatcccgcgcctgcgtgagctgctcatctacgcgtctgtgcagaag
gtggccattgtggtgccggtggagaaggcgacggaggtggacgaggaggcaatctcgcgc
attctgcaggccggcgtagcgacgcggttgacggactgcatggcccgcgtacctgctgct
gtcacagcgggtgcggacagcggcgcagcggcgagggcgcagacgacgccggggtaccac
tatcgtgtcacccgcagcgctgagggcacacaggtgacggtggcacttctcttctcgaag
acgctgcttatgcaaaagcagcacgccatgtgcatgtcgacagccgagcaccttcagtcc
tttacgcagactctgaagaactttgcacggcaggtggtgacggcgctgcggggtcgctcg
aaggacgagcgcgaaggcgccggcgggccgctgcgtgggacaacgcaagacccgtcttcc
cagatggacgacggcaccgccgcggccggcggcggcatgagtgacaacgaggacgacatg
gacgagcggtccacgcagatgaacacaccggcgctcggggccgcctcggcgccgtccgtc
gccggcagcgagcttggacgtgacgacatgatcccggaaagggacgacaacggcggcagc
agcggcagtgacgaggatgattacgacgaggcagtggacgcggcggacagctcgcggcgg
cgcaagggcggcaaaggcaacagccccctgcgcaagaagtctcgagcagaggaagacgac
aacgaggaggatgatgaggacgtcaatggattgttctggaagagctccagcaacggcggc
accaacagcgaggcggctgccgcggcgtccggcaaggtgagctacgactgctttcctacg
gtgtgcgtcatgtacggcaacaagaagtaccgggtagaaatcgcgccgctgctgcgggag
gcggccacccgcgacggggtcgtgccactaccggaggatctctttgtagtgaacgtgtcg
atacagacgtcggaccaggtggtcaccgtcatcccggatgtgctcgagagtgccctggcg
cagcagacgttcccgtcgtggctcacgcagttcgactccgtcacgtacactcgcaaggct
gaggacccgacgagtggagagatggtgttccagggcagttcggcgacgatccgcagtgtg
acggcgttcctcgccctcttcaccgtccgcgcacgcgccatcaagctgcagaaggcgcgg
tccaccgacatccgcgacatgtgcacctccttcggcgtggaaagtggctacacagctctc
ttcgatgagctggagaagcttttcaagcgctactccgtcgactaccaccacctcaccctc
atcgccgacgcagcgacccaccgtggcgtgtgggagaactacaacttcaccggcgtcatc
tcccatagcgccagcccgctcttccagatgacgttcgcgtcgtccaagcgcttcctgcac
acggccctgacgcgtggcatcggcgacgagctgaactccatcagctcggccatcatggtc
ggtgagcggcctcgcgtcggaacggcgctcgtcaaggtgggccaggacccgcagatcttg
cgcgatgtcattgagaagaactttgcctga
DBGET
integrated database retrieval system
