KEGG   Leishmania major: LMJF_21_1552
Entry
LMJF_21_1552      CDS       T01014                                 
Name
(RefSeq) putative RNA helicase
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
lma  Leishmania major
Pathway
lma03013  Nucleocytoplasmic transport
lma03015  mRNA surveillance pathway
lma03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    LMJF_21_1552
  09122 Translation
   03013 Nucleocytoplasmic transport
    LMJF_21_1552
   03015 mRNA surveillance pathway
    LMJF_21_1552
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lma03019]
    LMJF_21_1552
   03041 Spliceosome [BR:lma03041]
    LMJF_21_1552
Enzymes [BR:lma01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     LMJF_21_1552
Messenger RNA biogenesis [BR:lma03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     LMJF_21_1552
Spliceosome [BR:lma03041]
 Complex C
  Other components
   EJC/TREX
    LMJF_21_1552
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    LMJF_21_1552
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 P-loop_SecA CMS1 EH_Signature
Other DBs
NCBI-GeneID: 5651717
NCBI-ProteinID: XP_001683110
UniProt: Q4QC38
LinkDB
Position
21:complement(645248..646555)
AA seq 435 aa
MSSDLADFDGDDVRTTVVAAQPMGVGMGTHSAVALGGFQDFCLKSELANAIRENGFEHPS
EVQHQALPKAMLGADILAQAKSGMGKTAVFVFALLEQVEKVPQGQKPYCQAVVLVHAREL
AYQIEQEFKRFSKYLPYATTGVFFGGIPEDENVKQLKKEVPAIIVGTPGRMKALIQNKAF
DTTHVKWFVVDEFDRCLEDVKMRRDVQEIFMKLPKEKQVMMFSATMTDELRDVAKKFMKD
ATEIYVDQRAKLTLHGLAQFYMNVTEPEKTRRLAEILDVVEFNQAIIFTSSVERCEALNR
QLQQMKFPSQAVHSRMSQEERLRVYESCKANNTRIMVATDLFGRGVDFDRINLVVQYDMA
SEADSYLHRVGRAGRFGTKGLTIAFITTDEKEIKRENRTYTDGGIMKEVQERFEMKVEEL
TDINTQLNENQYMNK
NT seq 1308 nt   +upstreamnt  +downstreamnt
atgagcagcgatcttgcggacttcgacggcgatgatgtcaggaccaccgtcgtggcggca
cagccgatgggcgtcggaatgggcacccacagcgccgtcgccctcggtggcttccaggac
ttctgcctgaagagcgagcttgcgaacgccatccgcgagaacggcttcgagcacccgtcg
gaggtgcaacaccaggcgctgcccaaggcgatgctcggcgctgacattctcgcccaggcc
aagtcgggtatgggtaagacggccgtcttcgtctttgcgctgctggagcaggtggagaag
gtgccgcagggacagaagccgtactgccaggccgtcgtgctggtgcacgcccgcgagctg
gcctaccagattgagcaggagttcaagcgcttcagcaagtacctcccgtacgccaccaca
ggcgtcttcttcggcggcatcccggaggacgagaacgtgaaacagctgaagaaggaggtg
ccagcgatcatcgtcggtacgccaggccgcatgaaggcgctcatccagaacaaggccttt
gacacgacgcacgtgaagtggtttgtggtcgacgagttcgaccgctgcctagaagacgtg
aagatgcgccgtgacgtgcaggagattttcatgaagctgccgaaggagaagcaggtgatg
atgttctctgccacgatgacggatgagctgcgcgatgtggcaaagaagttcatgaaggac
gcgacggagatttacgtggatcagcgggcaaagctgaccctgcacggtctggcgcagttc
tacatgaacgtcacggagccggagaagacgcgccggctggcagagatcctcgacgttgtg
gagttcaaccaggcgatcatcttcacatcctcggtcgagcgctgcgaggcgctgaaccgc
cagctacagcagatgaagttcccgtcgcaggccgtgcattcccgcatgagccaggaggag
cgcctgcgcgtgtacgagagctgcaaggcgaacaacacccgcatcatggttgccaccgac
ctcttcggccgcggagtcgactttgaccgcatcaacctcgttgtgcagtacgacatggcc
tccgaggctgacagctaccttcaccgagtcggccgcgccggccgcttcggtacgaaggga
ctgacaatcgccttcatcacgacagacgaaaaggagatcaagcgcgagaaccgcacctac
acggatggcggcatcatgaaggaggtgcaggagcgcttcgagatgaaggtcgaggagctg
acggacatcaacacccagctgaacgagaaccagtacatgaacaagtaa

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