Leishmania major: LMJF_21_1552
Help
Entry
LMJF_21_1552 CDS
T01014
Name
(RefSeq) putative RNA helicase
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lma
Leishmania major
Pathway
lma03013
Nucleocytoplasmic transport
lma03015
mRNA surveillance pathway
lma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LMJF_21_1552
09122 Translation
03013 Nucleocytoplasmic transport
LMJF_21_1552
03015 mRNA surveillance pathway
LMJF_21_1552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lma03019
]
LMJF_21_1552
03041 Spliceosome [BR:
lma03041
]
LMJF_21_1552
Enzymes [BR:
lma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LMJF_21_1552
Messenger RNA biogenesis [BR:
lma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
LMJF_21_1552
Spliceosome [BR:
lma03041
]
Complex C
Other components
EJC/TREX
LMJF_21_1552
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
LMJF_21_1552
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
CMS1
EH_Signature
Motif
Other DBs
NCBI-GeneID:
5651717
NCBI-ProteinID:
XP_001683110
UniProt:
Q4QC38
LinkDB
All DBs
Position
21:complement(645248..646555)
Genome browser
AA seq
435 aa
AA seq
DB search
MSSDLADFDGDDVRTTVVAAQPMGVGMGTHSAVALGGFQDFCLKSELANAIRENGFEHPS
EVQHQALPKAMLGADILAQAKSGMGKTAVFVFALLEQVEKVPQGQKPYCQAVVLVHAREL
AYQIEQEFKRFSKYLPYATTGVFFGGIPEDENVKQLKKEVPAIIVGTPGRMKALIQNKAF
DTTHVKWFVVDEFDRCLEDVKMRRDVQEIFMKLPKEKQVMMFSATMTDELRDVAKKFMKD
ATEIYVDQRAKLTLHGLAQFYMNVTEPEKTRRLAEILDVVEFNQAIIFTSSVERCEALNR
QLQQMKFPSQAVHSRMSQEERLRVYESCKANNTRIMVATDLFGRGVDFDRINLVVQYDMA
SEADSYLHRVGRAGRFGTKGLTIAFITTDEKEIKRENRTYTDGGIMKEVQERFEMKVEEL
TDINTQLNENQYMNK
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgatcttgcggacttcgacggcgatgatgtcaggaccaccgtcgtggcggca
cagccgatgggcgtcggaatgggcacccacagcgccgtcgccctcggtggcttccaggac
ttctgcctgaagagcgagcttgcgaacgccatccgcgagaacggcttcgagcacccgtcg
gaggtgcaacaccaggcgctgcccaaggcgatgctcggcgctgacattctcgcccaggcc
aagtcgggtatgggtaagacggccgtcttcgtctttgcgctgctggagcaggtggagaag
gtgccgcagggacagaagccgtactgccaggccgtcgtgctggtgcacgcccgcgagctg
gcctaccagattgagcaggagttcaagcgcttcagcaagtacctcccgtacgccaccaca
ggcgtcttcttcggcggcatcccggaggacgagaacgtgaaacagctgaagaaggaggtg
ccagcgatcatcgtcggtacgccaggccgcatgaaggcgctcatccagaacaaggccttt
gacacgacgcacgtgaagtggtttgtggtcgacgagttcgaccgctgcctagaagacgtg
aagatgcgccgtgacgtgcaggagattttcatgaagctgccgaaggagaagcaggtgatg
atgttctctgccacgatgacggatgagctgcgcgatgtggcaaagaagttcatgaaggac
gcgacggagatttacgtggatcagcgggcaaagctgaccctgcacggtctggcgcagttc
tacatgaacgtcacggagccggagaagacgcgccggctggcagagatcctcgacgttgtg
gagttcaaccaggcgatcatcttcacatcctcggtcgagcgctgcgaggcgctgaaccgc
cagctacagcagatgaagttcccgtcgcaggccgtgcattcccgcatgagccaggaggag
cgcctgcgcgtgtacgagagctgcaaggcgaacaacacccgcatcatggttgccaccgac
ctcttcggccgcggagtcgactttgaccgcatcaacctcgttgtgcagtacgacatggcc
tccgaggctgacagctaccttcaccgagtcggccgcgccggccgcttcggtacgaaggga
ctgacaatcgccttcatcacgacagacgaaaaggagatcaagcgcgagaaccgcacctac
acggatggcggcatcatgaaggaggtgcaggagcgcttcgagatgaaggtcgaggagctg
acggacatcaacacccagctgaacgagaaccagtacatgaacaagtaa
DBGET
integrated database retrieval system