KEGG   Leishmania major: LMJF_23_1550
Entry
LMJF_23_1550      CDS       T01014                                 
Name
(RefSeq) hypothetical protein
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
lma  Leishmania major
Pathway
lma03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    LMJF_23_1550
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lma03019]
    LMJF_23_1550
   03041 Spliceosome [BR:lma03041]
    LMJF_23_1550
Messenger RNA biogenesis [BR:lma03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     LMJF_23_1550
Spliceosome [BR:lma03041]
 Complex B
  Other components
   Prp19-related factors
    LMJF_23_1550
 Complex C
    LMJF_23_1550
SSDB
Motif
Pfam: HAT_Syf1_CNRKL1_N HAT_Syf1_CNRKL1_C HAT_PRP39_C HAT_PRP39_N Suf NRDE-2 HAT_Syf1_M
Other DBs
NCBI-GeneID: 5652164
NCBI-ProteinID: XP_001683515
UniProt: Q4QAY3
LinkDB
Position
23:756508..758892
AA seq 794 aa
MDGDPRVSALQWEVAKEASTSPKTWAELARTTAAATAADPVERANAVTLVYERALRAFAS
SYKLWMAYISYRQRETSRMCGPNEWFQAVREVYERALTELPKMPMLWVSYMEFVVASEVP
RVTMTRHILARALAALPATQHHHLWKIAKRWCAMPIVPSATVRAVWWLYLSFQRSLHAKR
EYFQVLVQKGDFNGFLQECVRLGLPDKSNKGAVEERDLLLSDVSFWETVQTALQGKGWRF
TGDIGRLRELVALGKLRCASPVELSMAFAVFLYGQGHMREGRQELRQLLDEAPEAQTLIS
LYHLAVEMEDQLVESFAVDPDLRGLDDAAYNGVVQHLFGDGDPLRHLERLAREFPLLLNQ
AQLRNSPHNAALWLKRVELLQEDVYAGRSTFDDLVALYRQAIQQCTAGMSRVDGAAAQLF
SSCAQTLIRGGKLDSAIAVLSEGTWCVPFTSAALNVQLLGLLVEVQLMSFASPLSVRDAL
AERLTSGARSGASKRSRNGLLQSSAALPRVAHHPHAWIMWCDVCAAYDSANAAAWHRLVE
ALASSPAFSAEAACYVAHKAYVCRQESIAVMMLERAVAATRQQPTAQLFVLEQYLSFLCV
RDGRQVPLHQFREVFSLVQQVTPVAIRTAPSAVIDLYVSCAYMEAAIGLYGTAVRMMQEI
SLVATAALRGRDEHLRVLQAILEHSITFTEQRRGYNSVRAYCGALVQRLQHALLLQRVAL
HWAAIEKRSGNTAQAHLILDACGDSQDPSTEHGEVYWRLWESLCTNVEEFEKVARRRQQA
SIRFNKRQSAKGAE
NT seq 2385 nt   +upstreamnt  +downstreamnt
atggacggcgacccgcgcgtgagcgccctacaatgggaggtggccaaagaggcctcgacg
tcgcccaagacgtgggcggagctggcccgcaccaccgctgcggccactgcggctgatccc
gtggaaagggcgaacgcggtgacgctagtgtacgagcgcgccttgcgtgcgtttgcctct
tcctacaagctgtggatggcttacattagctatcgccagcgggagaccagtaggatgtgc
gggccgaacgagtggttccaagcggtgcgcgaggtgtacgagcgggcgttgacggagctt
ccgaagatgccgatgctctgggtcagctacatggagtttgtcgtcgcctctgaagtgccg
cgtgtgacaatgacgcggcacatactcgcgcgcgccctggccgcgctgccagcgactcag
caccatcatctctggaaaattgcaaagcgctggtgcgccatgcccatcgtgcccagtgcc
acagtgcgggctgtctggtggctttatctctccttccagcgctcactgcatgcgaagcgg
gagtactttcaggtgctcgtgcagaagggcgacttcaatgggtttctgcaagagtgcgtg
cgcctggggctgcccgacaagtcgaataagggcgccgtcgaggagcgtgacctgctcttg
agcgacgtgagcttttgggagacggtgcagacggcactgcaaggaaagggctggcgcttc
acaggcgatatcggccggctgcgtgagctggtcgctcttggaaagctgcgctgcgcctct
ccggtcgagctctccatggcctttgccgtttttctttacggtcaggggcacatgcgagag
ggccgacaggagctgcgccagctgctggacgaggcaccggaggcccagacgctgatctcg
ctctaccaccttgccgtggagatggaagaccaactcgtggagtcttttgccgtggatccc
gatctccgaggcctcgacgacgccgcgtacaacggtgtggtgcagcatctcttcggtgac
ggcgacccactcaggcacctcgagcgacttgcgcgcgagttcccgctgctccttaaccag
gcgcaactgcggaacagcccgcacaatgcagcactgtggctcaagcgtgtggagctgctc
caggaggacgtctacgccggccgctccacctttgacgatctcgtcgctctttaccgccag
gctattcagcagtgtactgcaggtatgtcgcgtgtagacggcgcggcggcgcagttgttc
tcttcttgtgcccagaccctcattcgtggcggcaagctggacagcgccatagcggtgctc
agtgagggcacgtggtgcgtgccattcaccagtgccgctctaaacgtgcagctccttggt
cttcttgttgaggttcagttgatgtcgttcgcctcgcccttgtcagtgcgggatgctctc
gcggagagactgaccagcggtgctcgcagtggcgcttcaaagcgcagccgaaacgggctt
ctgcagtcgagtgcagcgctgccccgcgtggcgcaccacccacacgcgtggatcatgtgg
tgtgacgtttgcgctgcctacgactcggccaacgcggccgcttggcaccgccttgtcgag
gcactcgccagctcgcccgccttctccgcggaagccgcctgctacgtggctcacaaggcc
tacgtctgtaggcaagagtccattgcggtcatgatgctggagagagccgtcgctgccacg
cggcagcagcctaccgcacagctttttgtgctggagcagtacctctccttcctgtgcgtc
cgcgacggccgacaggtgccgctgcatcagttccgcgaagtgttcagccttgtgcagcaa
gtgaccccggtcgccatacgcactgcaccgtctgccgtcatcgacctgtacgtcagctgc
gcttacatggaggcagcgatcggcctatatggcacagctgttcgcatgatgcaggagatt
tccttagtcgctactgcagcgctgcgggggcgtgatgagcacctccgtgtcctgcaggcc
attcttgagcactctatcaccttcacggagcagcgcaggggctacaattcggtgcgcgcg
tactgcggggctcttgttcagcgcctccagcacgcacttctgctgcagcgtgttgcgctt
cactgggccgcgatcgagaagcgctctggcaacacggcacaggcgcatcttatcctcgac
gcgtgcggggacagccaggacccgtccacggagcatggcgaggtgtactggcggctgtgg
gagtctctatgcacaaatgtggaggagtttgagaaggtggctcggcgacgccagcaggcg
tcgattcgcttcaacaagcgccagagtgcgaagggggcggagtag

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