Leishmania major: LMJF_28_1530
Help
Entry
LMJF_28_1530 CDS
T01014
Name
(RefSeq) putative ATP dependent DEAD-box helicase
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
lma
Leishmania major
Pathway
lma03013
Nucleocytoplasmic transport
lma03015
mRNA surveillance pathway
lma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LMJF_28_1530
09122 Translation
03013 Nucleocytoplasmic transport
LMJF_28_1530
03015 mRNA surveillance pathway
LMJF_28_1530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lma03019
]
LMJF_28_1530
03041 Spliceosome [BR:
lma03041
]
LMJF_28_1530
03009 Ribosome biogenesis [BR:
lma03009
]
LMJF_28_1530
03012 Translation factors [BR:
lma03012
]
LMJF_28_1530
Enzymes [BR:
lma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LMJF_28_1530
Messenger RNA biogenesis [BR:
lma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
LMJF_28_1530
mRNA cycle factors
Stress granule specific factors
LMJF_28_1530
Spliceosome [BR:
lma03041
]
Complex C
Other components
EJC/TREX
LMJF_28_1530
Ribosome biogenesis [BR:
lma03009
]
Eukaryotic type
90S particles
Helicases
LMJF_28_1530
Translation factors [BR:
lma03012
]
Eukaryotic type
Initiation factors
eIF-4
LMJF_28_1530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
TelK_muzzle
CPDase
Motif
Other DBs
NCBI-GeneID:
5653365
NCBI-ProteinID:
XP_001684436
UniProt:
Q4Q8B2
LinkDB
All DBs
Position
28:569747..570916
Genome browser
AA seq
389 aa
AA seq
DB search
METEQVDNIQANVLAIPTFEAMGLKEDLLKGMYSFGYKQPTAIQKRFIMPFLKGRDVIAQ
ASSGTGKTSAFCVCLLQACDPHTRETQALILSPTRELAVQTQDLCNNIGHHMGLTAYACI
GGKSTEEDIRRLESGVHIVSGTPGRVFDMIRRKSLRVNGLKTLVLDEADEMLGKGFKAQI
HDIYRMVPPLQIILVSATLPADVLEMTEKFMTEPTSILVKRDEITVDSVKQYFVSVDEEK
NKFDVLMELYDSLTIAHAVVFCNTRKKVEQLAKKMTREKFAVSAMHGDMPQAERDEIMRQ
FRNGHSRVLITTDLWARGIDVERVSLVLSYDLPLAREQYIHRIGRTGRMGRTGLAITFVR
HDELRLLRDIEQFYATQIEELPANIGEQM
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggagacggagcaagtagataatattcaggccaatgtgcttgccatcccaacctttgag
gcgatggggttgaaggaggacctgctcaagggcatgtacagcttcggttacaagcagccc
accgccattcagaagcgcttcattatgcccttcctaaagggacgcgacgtgattgcgcag
gcgtcttcgggtacgggcaagacgtccgccttctgcgtctgtctcctgcaagcgtgcgac
ccgcacacgcgtgagacgcaggccctcatcctctcgccgactcgcgagctggcggtgcag
acgcaggatttgtgcaacaacattggccaccacatggggctgacagcgtacgcgtgcatc
ggtggcaagagcacggaggaggacatccgccgtctggagagcggtgtgcacatcgtctcg
ggcacgcccggccgcgtctttgatatgatccgccgcaagagccttcgcgtaaatgggctg
aaaaccctcgtgctggacgaggctgatgaaatgctgggcaaaggctttaaggctcagatt
cacgacatctaccgcatggtcccaccgctgcagatcatcctcgtgtcggcgacgctgccg
gccgacgtgctggagatgacggagaagttcatgacggagcccacgagcattctcgtgaag
cgggatgagatcaccgtggatagcgttaaacagtactttgtctccgtcgacgaagagaaa
aacaaattcgatgtcttgatggagttgtacgacagcctcacgatcgcccacgccgtggtc
ttctgcaacacccgcaaaaaggtggagcagcttgccaagaagatgacgcgcgagaagttc
gctgtgtccgccatgcacggcgacatgccccaggcggagcgcgacgagattatgcggcag
ttccgtaatggacacagccgcgtgctcattacaacggacctgtgggcgcgtggcattgat
gtggagcgcgtctcgctcgtcctcagctacgatttgccgctcgcgcgtgagcagtacatt
caccgcatcggccgcactggccgcatgggccgcactggactggccatcaccttcgtgcgc
cacgacgagctgcgcttgttgcgcgacattgagcagttctacgcgacgcaaattgaagaa
ctccccgcgaatatcggcgagcaaatgtag
DBGET
integrated database retrieval system
