Leishmania major: LMJF_28_2080
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Entry
LMJF_28_2080 CDS
T01014
Name
(RefSeq) putative mitochondrial DEAD box protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lma
Leishmania major
Pathway
lma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LMJF_28_2080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lma03041
]
LMJF_28_2080
03009 Ribosome biogenesis [BR:
lma03009
]
LMJF_28_2080
Enzymes [BR:
lma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LMJF_28_2080
Spliceosome [BR:
lma03041
]
Complex A
U1 snRNP components
U1 related factors
LMJF_28_2080
Complex B
LMJF_28_2080
Ribosome biogenesis [BR:
lma03009
]
Eukaryotic type
Pre-60S particles
Helicases
LMJF_28_2080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
T4SS-DNA_transf
Motif
Other DBs
NCBI-GeneID:
5653419
NCBI-ProteinID:
XP_001684490
UniProt:
Q4Q858
LinkDB
All DBs
Position
28:complement(814559..816193)
Genome browser
AA seq
544 aa
AA seq
DB search
MRRFASALFGRWGAAQCGVVPFRARPTLLPMMSRVRCFSVISAAYEGLAPATSSNIGDPH
APPKTRASAVSTEHDVSITDGNGDRVDVTPLNSFEELRDAPRWLAEGLKTLKYPSTTDIQ
KFTIPLLANGHDVIGLAPTGSGKTVAFAVPALAGLKPNPDGTPSVLVLAPTRELVQQTTK
VFQNLGCGQVRVCEAYGGAPRDLQARHLRNGCDALVACPGRLKDFLDGGDVSIRNLSFLV
FDEADRLLDMGFQVHLDEIMAYLDSASHPQTMMWSATWPESVQAMARKYLSDDRVLIRAG
TAGAGLQVNERIKQELIFCRTFTERIEKLGSLVEDGTIDDNKDKLIIFVERQADTENTAR
AFSHRLGIDTRYVGTIHGGLSQRQRDRVMSMFKSNHIRLLVATDVASRGLDIPDVTCVVN
FQAPKTIDSYCHRIGRTGRAGRTGTAYTFLGEEDGGLATELVNYLTRCHVTAPKELTQLA
ESYQHRMQQQRQRFRRVDRGGFSRSENSSGFGRRRSDRGGSREFMPRRPDSRKRDDDLPS
TLDW
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgttttgcaagtgccttgtttggcaggtggggtgccgcacagtgcggggtggtg
ccttttcgggctcgcccgactcttttgcccatgatgagcagggtgcgctgcttctctgtg
attagtgctgcttacgagggattggcccccgcaacgagctcgaatatcggcgacccgcat
gcgccaccgaagacaagggcgtctgcagtgtcaacagagcacgatgtctctatcacggac
ggcaatggtgatcgtgtcgacgtcaccccgctaaactcatttgaagagttgcgcgatgca
ccgcgatggctggcggaggggttgaagacgctcaagtacccttccacgactgacattcag
aagttcacaatacctttgctggccaacggccacgatgttatcggacttgcaccaacaggc
tcgggaaagacggtggcgttcgcggttccagccctggcggggctcaagcccaaccccgat
gggacgccgtctgttctggttctagctcccacgcgggagttggtgcaacaaaccaccaag
gtgtttcagaaccttggatgtgggcaggtgcgcgtctgcgaggcctacggtggtgccccg
cgcgatctacaggcccgccatcttcgcaacggctgcgacgctctcgttgcctgtccagga
cgactcaaggactttctcgacggcggcgacgtgtccatccgtaatctgtcgtttctggtc
tttgacgaagcagatcgccttctcgacatggggttccaggttcacttggatgagattatg
gcctacctcgactcagcctcacatccgcagacgatgatgtggtcggcgacgtggccagag
tcggtgcaagcgatggcgcgcaaatatctatccgacgatcgtgttttgattcgagccggt
acggccggcgcggggcttcaagtgaatgagcgcatcaagcaagagcttatcttctgccga
accttcacagagcgcattgagaagcttgggtcgttggtcgaggatgggacaatcgacgac
aacaaggacaagctcatcatctttgtggagcgccaggcggatacggaaaacacagccagg
gctttcagccaccggctaggaatcgatacacgctacgtagggacaattcacggcggtctg
tcgcagcggcagcgggacagggtcatgagcatgttcaagagcaaccacattcgccttctc
gtcgcgaccgatgttgcttctcgaggcctagacattcctgatgtaacgtgcgtggtgaac
tttcaggctccaaaaaccattgacagctactgccatcgcattggccgcaccggccgcgcc
ggtcgcaccggcacggcttacacatttcttggcgaagaggacggtggcctcgcaacagaa
ctcgtcaactacttgactcgttgtcatgttactgccccaaaggagttgacgcagctcgcc
gagagctaccagcatcggatgcagcagcagaggcagcgcttcaggcgtgtcgatcgagga
ggtttctccagaagtgagaacagcagtgggttcggccgccgccgcagcgatcgaggcggt
tcacgcgagttcatgcctcgcaggcccgactcgcgcaagcgcgatgacgatcttccgtcc
acgttggactggtga
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