Leishmania major: LMJF_36_1790
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Entry
LMJF_36_1790 CDS
T01014
Name
(RefSeq) putative exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
lma
Leishmania major
Pathway
lma03008
Ribosome biogenesis in eukaryotes
lma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lma00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
LMJF_36_1790
09123 Folding, sorting and degradation
03018 RNA degradation
LMJF_36_1790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lma03021
]
LMJF_36_1790
03019 Messenger RNA biogenesis [BR:
lma03019
]
LMJF_36_1790
03009 Ribosome biogenesis [BR:
lma03009
]
LMJF_36_1790
03016 Transfer RNA biogenesis [BR:
lma03016
]
LMJF_36_1790
Transcription machinery [BR:
lma03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
LMJF_36_1790
Messenger RNA biogenesis [BR:
lma03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
LMJF_36_1790
Ribosome biogenesis [BR:
lma03009
]
Eukaryotic type
Pre-60S particles
RNases
LMJF_36_1790
Transfer RNA biogenesis [BR:
lma03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
LMJF_36_1790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
Motif
Other DBs
NCBI-GeneID:
5655435
NCBI-ProteinID:
XP_001686753
UniProt:
Q4Q1P5
LinkDB
All DBs
Position
36:complement(709059..711746)
Genome browser
AA seq
895 aa
AA seq
DB search
MGIAGFFLWLQRWYGDCIDNIPQDVVDAAFKGQALPHSHASAYSYDNFYVDMNGLIHPCC
HDTAPLPEPENEEEMFERMFDQLDLLVRVVRPKKCLVLCVDGVAPRSKMNQQRSRRFRAA
DERLESDAISNACADSIVSEYHLPRPRVRERWDHNVITPSTAFMERVALALEWYIMKKLN
EDAAWRHLTVVFSDAHVPGEGEHKIMQYIRGLRSQPGYDYNTSHVIHGMDADLICLGLST
HEKHVCILRNQLTETFQPDHNRFCYFNLSTYREKLMQDFANIEGMQFERVVDDFIFLCFF
VGNDFLPHVPLVSIKTRGIEMLLDHYVRDFALHGYLTQLGEVDYAHLHIFLMNFTSKCMM
KLTKEYYGVVRAKERAKQHVEERVTKTEAQVSEVLGTLLPDRSNAQEVSDALLGLMSSAR
KERTRFVVDKQPLGFSYLDKTYRDAYYQHKFGWDPSTNRAAFESQIRLCCAEYLRGMQWV
MRYYTKGCPSWEWYFPYHYAPLLQDLAAFTATVNVEMRMSAPLHPVEQLLAVLPRLSVHA
LPEELHEAVNDPKSVLGKFYPAIVDVDFSEANFSYQGVLRIPFINCEALSKACRQLVELE
EDFGSTFLYCHESTSLAKQLDALTGPSNSALPLATGLAPPVVPIPSSVASTMPIAGRMGR
YEAEWPRHEELQCPDPGMAKSTRYGGRIQSNRVNQYRYELSTQADYRPVLMGEENATKNG
AAAAASKPSKRLEKEQSPPRHRKRGRDADHVANSNDAKRKRGSSRHDDDGRDRRERHRSN
GEREQNGESRRRSKDGNTCEASSSSRHTSSSKHCSGHDDDARRSSELRHRSKEGKKRSSQ
HQTRSRESKSEAQPAPSSSSSRRAKKSRETKKVPRPSEKMASTKPSRHGHRQQRA
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgggcattgctgggttctttttgtggctgcagcgatggtacggcgactgcatcgacaac
atcccacaggatgtggtagatgctgccttcaagggtcaggcgcttccgcacagtcatgcc
agtgcgtactcgtacgacaacttttatgtggacatgaacgggttgattcacccttgctgc
cacgatacggcgccgctgccggagccagagaacgaggaggagatgtttgagcgcatgttt
gaccagcttgacctcctcgtcagggtggtgcgtccgaagaagtgccttgtgctgtgcgtc
gacggcgtcgctccacgtagcaagatgaatcaacagcgcagccgtcgcttccgcgccgca
gacgagcgcctggagagcgacgccatctcgaacgcctgcgcagacagcatcgtctccgag
tatcaccttccccggccccgcgtccgggaacgctgggaccacaacgtcataaccccgtcc
acggcgttcatggagcgcgttgccctcgcgcttgagtggtacattatgaagaagctgaac
gaggacgccgcatggcgccatttgacggtcgtcttctcggacgcgcacgttccgggcgag
ggcgagcacaagatcatgcaatacatccgcggcctgcgctcgcagcccggctatgactac
aacactagccacgtcattcacggcatggatgccgacctcatctgcctcgggctgtcgacg
cacgagaaacatgtctgcatcttgcgcaaccagctcaccgagaccttccagccagatcac
aatcggttctgctacttcaacctaagcacgtaccgcgagaagctcatgcaggactttgcg
aacatcgagggcatgcagttcgagcgcgtcgttgacgacttcatctttctctgcttcttc
gtcggcaacgatttcttgccgcacgtgccgctcgtgtccatcaagacgcgtggcatcgag
atgctcctcgaccactacgtgcgcgacttcgcgctgcacggctacttgacccagctcggc
gaggtggactacgcccacctgcacatcttcctcatgaacttcacctccaaatgcatgatg
aagttgacgaaggagtactacggcgtcgtccgcgctaaggagcgcgcgaagcagcacgtc
gaggagcgcgtcaccaagacggaggcgcaagtatcggaggtgctggggaccttgctgcca
gatcgcagcaacgcacaagaggtcagtgacgcgttactggggctcatgtcatctgcgcgg
aaagagcgcacccgcttcgtcgtggacaagcagccgctggggttctcctacctcgacaag
acgtaccgcgacgcgtattaccagcacaagttcggctgggacccgtcgaccaaccgtgcc
gccttcgagagccaaattcggctctgctgtgccgagtacctgcgtgggatgcagtgggtg
atgcgctactacacgaaggggtgcccatcgtgggagtggtactttccgtaccactacgcc
ccgctactgcaggacttggcggcgttcacggcgacggtgaacgtcgaaatgcgcatgagc
gcccctcttcacccagtagagcagctgctggcggtgctgccgcggctgagcgtgcacgcc
ctgcctgaggagctgcacgaggccgtgaacgaccccaagtccgtcctgggtaagttctac
cccgccatcgtcgatgtcgactttagcgaagccaacttctcgtaccaaggggtactgcgt
attcctttcatcaactgcgaggccctcagcaaggcgtgccgacagctggttgagttggag
gaggactttggcagcacattcctctactgccatgagtccacctcactggcgaagcagcta
gacgctctgactgggccaagcaacagcgcattaccgctggcgaccggcttggcgccgccg
gtggtgccgatcccctcctcggtggcatcgacgatgccgattgccggccgaatgggacgc
tatgaggcggagtggcctcgacacgaggagctgcagtgccccgacccgggcatggccaag
tccacgcgctacggtggacgcatccagtcgaaccgggtgaaccagtaccgttacgagctc
agcacacaggccgactaccgtcccgtgctcatgggcgaggagaacgcgaccaaaaacggg
gcggcggcggccgcatcgaagccgtccaagcgactggaaaaggaacagtcaccaccgcgg
caccgcaagcggggtcgcgatgcagaccacgtcgccaacagtaacgacgctaaacgcaag
agaggctccagccggcacgatgacgacggcagggacaggcgtgagcgccaccgcagcaac
ggcgagagggagcagaatggcgagagccggcgccgcagcaaggacggcaacacgtgtgag
gcctcttcctcctcgcgtcacacctcatcttccaagcattgctcgggccacgatgacgac
gctcggcgcagcagcgagttgaggcatcgctccaaggaggggaagaagaggagctcgcag
caccagactcgatctcgcgagagtaaaagcgaggctcaacccgcaccctcgtcttcgtca
tctcgacgcgccaagaagagccgcgaaacgaagaaggtaccgcggccgtccgaaaagatg
gcgtcgaccaagccgtcgcggcacggtcatcgacagcagcgcgcgtga
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