Leishmania major: LMJF_36_3000
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Entry
LMJF_36_3000 CDS
T01014
Name
(RefSeq) putative ATP-dependent RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lma
Leishmania major
Pathway
lma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMJF_36_3000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lma03019
]
LMJF_36_3000
03041 Spliceosome [BR:
lma03041
]
LMJF_36_3000
03009 Ribosome biogenesis [BR:
lma03009
]
LMJF_36_3000
03016 Transfer RNA biogenesis [BR:
lma03016
]
LMJF_36_3000
Enzymes [BR:
lma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LMJF_36_3000
Messenger RNA biogenesis [BR:
lma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
LMJF_36_3000
Spliceosome [BR:
lma03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
LMJF_36_3000
Complex C
U4/U6.U5 tri-SnRNP related factors
LMJF_36_3000
Ribosome biogenesis [BR:
lma03009
]
Eukaryotic type
Pre-60S particles
Helicases
LMJF_36_3000
Transfer RNA biogenesis [BR:
lma03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
LMJF_36_3000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
AAA_16
PhoH
AAA_22
nSTAND_NTPase5
FlxA
Phage_scaffold
Motif
Other DBs
NCBI-GeneID:
5655590
NCBI-ProteinID:
XP_001686879
UniProt:
Q4Q1B9
LinkDB
All DBs
Position
36:complement(1223367..1226273)
Genome browser
AA seq
968 aa
AA seq
DB search
MHISRSQGTHTVLRMSDGREDEPAAKRTRREVDPAITFPYELDTFQKTSIDALEEGDSVL
VSAHTSAGKTTVALYAIAKALREKKRVIYTSPIKALSNQKFREFSEKFDSVGLMTGDTTI
KADADCLVMTTEILRSMLYRGTEMLREVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQ
YVFLSATIPNAREFADWVESIHPTTKVHVIHTDYRPVPLQHYLYPAGADGIFLIVDEKGK
FRDDNFGKAIASMGAEGGANGVGAAGPGNGSSKDPRGNHKGGGGRSHGGSSQSMMEIVKL
VMDRNMYPVIVFSFAKAECERNALALSRLNFNNAEEDALVMEVFNNAMESLAEEDRKLPA
IEHLHPLLKRGVGIHHSGLLPILKEIVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTS
VKKFDGEKNRYLTGGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPNTLKQLTGGGADVLL
SSFHLTYNMVLNLLRVEDVDPEFMMKRSFSQFQRLRDKPALEEKGAALRRSIEEINVAHE
SAFRQYTICEDMIAKKKNEVSHILRQPKLLKNWVQAGRFVHIIRASDQRDFGWGICRSFA
AKSTNPNFSDPSTFSIQAAVICMKADASNPSALTPCPVSEYTSEKADLYTVTFDFSDVQC
LSTLKTNLPENPDSERGRAEVVQILSKLQRQFGHDIPVLTSAQMGAEDVQLSKLQTQLSN
LQKQLEGNILATSPTPELQEEFEQYKRKADLEAQLEQVKGELAGMGKAVFSEELKQMMRV
LRRLDYIDKDNIILRKARVACEITTTDENEILLTELLFKGVLNSMETEMIVALLSCLVNV
HRTPDGFSLPQEFEQPLKDLNEIVTRIATVSAESGLLQENSSVEKVMPSLMEVTYLWAKG
AKFVDLVSKTTAYEGDIVRMMRRLEEMLRQLASAARSPAIGSIELHEKFLKGIQLIKRDI
VFASSLYL
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgcatatttctagatcccaaggcacgcacacagtgttacgaatgtcagacggccgcgaa
gacgaaccagcggcgaagcggacacgccgcgaggtcgacccggccatcaccttcccctat
gagctcgacacgttccagaagacaagtatcgacgctctcgaggagggcgacagcgttctc
gtgtcggcgcacacgtcggcaggtaagactaccgtggcgctctacgccatcgccaaggcg
ctgcgagagaagaagcgcgtcatttacacctcccccatcaaggcccttagcaaccaaaag
ttccgcgagttctccgaaaagttcgactccgtcggtctcatgaccggcgacaccaccatc
aaggcggacgcggactgccttgtcatgacgacagagattctacgcagcatgttgtaccgc
ggcaccgaaatgctgcgcgaggtgggctgcgtcgtcttcgatgaggtacactacatgcgc
gacaagtcgcgtggcgtggtgtgggaggaaacaatcagcttactgcctgagggatgccag
tacgttttcctctccgccaccatcccgaacgcgcgcgagtttgcggactgggtggagagc
atccatcccaccacaaaggtgcacgtcattcacacagactaccggccagtgccgctacag
cactacctgtacccggccggggccgacggcatcttcctcatcgtggatgaaaaaggcaaa
ttccgcgatgacaacttcggtaaggctatcgcgtcgatgggggcggagggcggcgcaaac
ggtgtgggtgcggcaggcccaggcaacggctcctccaaagacccgcgcgggaaccacaag
ggcggcggtggccgcagtcacggcgggtcctcgcagtccatgatggagatcgtcaagctc
gtgatggaccgcaacatgtaccccgtgattgtcttctccttcgccaaggcggagtgcgag
cgcaacgccctcgcactctcgcggctgaacttcaataacgccgaagaggatgctctcgtg
atggaggtgttcaacaatgctatggagtcgctggcggaagaggaccggaagctgcccgct
attgagcatctacacccgctcctgaagcgcggtgtcggcatccaccactccggtctcctt
ccaattttaaaggagattgtcgagattcttttccaggcgggtttggtcaaggttctcttc
tccaccgagactttctcgatggggcttaacatgccggctcgtaccgtcgtcttcacctct
gtcaagaagttcgacggtgagaagaaccgctacctcactggcggcgagtacattcaaatg
tcggggcgcgccggccgtcgcggcctcgaccgcgtcggcgttgtcattgccatggtggac
gaggcagtggagcctaacacgctgaagcagctgaccggcggtggcgccgacgtcctgctc
agcagtttccacctgacgtacaatatggtgctgaacctgctgcgcgtcgaggacgtcgat
cctgagtttatgatgaagcgcagcttttcgcaattccagcgcctgcgtgacaagccagcg
ctagaggagaagggcgccgctctgcgcaggtccatcgaggagatcaacgtcgcccacgag
agcgccttccggcagtacacgatttgcgaggacatgatcgcgaagaagaagaacgaggtg
agccacattctgcgccagcccaagctcctcaagaactgggtgcaggcgggccgttttgtg
cacatcatccgcgcctcagatcagcgcgactttggctggggcatctgccgctcatttgcc
gcaaagagcaccaacccaaacttcagcgaccccagcaccttctccatccaagccgctgtg
atctgcatgaaggcggacgcgtcgaatccgagcgctttgacgccgtgcccggtcagcgag
tacacctcggagaaggcggacctatacacagtgacgttcgacttctcggatgtgcagtgc
ctttcaacgctcaagacaaatcttcccgaaaacccggactcggagcgggggcgtgccgag
gtggtgcaaattctgtcgaagctgcagcgccagttcggtcacgacatccccgttctcacc
tctgcgcaaatgggtgccgaggacgtgcagctgagtaagctgcagacgcagctgtcgaac
ctgcaaaagcagctagagggcaacatacttgccacatcccccaccccagagctgcaggaa
gagtttgagcagtacaagcgaaaggcagacctcgaggctcagctggagcaggtgaagggt
gagctagctggcatgggcaaggcggtcttctccgaagagctgaagcagatgatgcgtgtg
ctgcgtcgcctggactacatcgacaaggacaacatcatcctccgcaaggcccgcgtagcg
tgcgagataacgacaacagacgaaaatgaaattctgctgacggagctgctcttcaaaggc
gtgctgaactcgatggagacggagatgattgtggctctcttatcatgtctcgtcaacgtg
caccgcaccccggatggcttctcgttgcctcaggagttcgagcagccgctgaaggacctc
aacgagattgttactcgcatcgccactgttagcgccgaaagcgggctactgcaagaaaac
agctcggtggagaaggtcatgccgtcactcatggaggtaacctacctgtgggcaaagggg
gcgaagtttgtcgatctcgtgagcaagaccacggcgtacgagggtgacattgtgcgcatg
atgcgtcgtctggaggagatgctgcgccagctggcctccgcggcgcggtcgccggccatc
ggcagcatcgaattgcacgaaaagttccttaagggcatccagctcatcaagcgtgatatc
gttttcgcgtcatcgttgtacttgtag
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