Lysinibacillus macroides: I6G82_06195
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Entry
I6G82_06195 CDS
T08056
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lmac
Lysinibacillus macroides
Brite
KEGG Orthology (KO) [BR:
lmac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lmac03016
]
I6G82_06195
Enzymes [BR:
lmac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
I6G82_06195
Transfer RNA biogenesis [BR:
lmac03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
I6G82_06195
Prokaryotic type
tRNA splicing ligases
I6G82_06195
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Ins_allergen_rp
ALIX_LYPXL_bnd
UPF0181
Motif
Other DBs
NCBI-ProteinID:
QPR69203
LinkDB
All DBs
Position
1217106..1218326
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AA seq
406 aa
AA seq
DB search
MIEMTGRYTGAKIYAQTALQTAIDQIQELINQPFMAGTTIRIMPDYHAGKGCVIGTTIQL
QDCVVPNLVGVDVGCGVFVAEIDASMVDYAKLDTIIRTYIPSGQDIHQDVSPTRHFLEFD
SKQFRATGLKDDYTNLSLGTLGGGNHFIELAKDEADRYYLLIHTGSRYVGAKVANWHQKR
AYESLRRQDLTEKIAELKQQGRAQEIQRMIQSYKAQNPVIPKDLAYLEGDLFDDYIHDMK
IAQQYARMNRWTIAKTIAEHMGWQFTETFDTIHNYIDTETMTLRKGAVRANKGEKLVIPM
NMRDGSLICIGKGNADWNYSAPHGAGRMFSRRAAKKALNMDDFKETMQGIWSTSVNEETL
DEAPMAYKPMAEITAVIEDTVDIVKVIKPVYNFKASEAVKPYQRKS
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgattgaaatgactggacgctatacaggcgctaaaatttatgcacaaacggcattacaa
acagctatcgaccaaattcaagaattgatcaatcagccctttatggcaggcacaacaata
cgaattatgcctgattatcatgcaggaaaaggctgtgtaattggtacgacgattcagttg
caggattgtgttgtaccaaatcttgtaggtgttgatgtaggctgcggtgtatttgtcgcg
gagatagatgcatcaatggttgattatgcaaagcttgatacaatcattcgaacctatatc
ccaagcgggcaggatattcaccaagatgtatcgccaacacgtcattttttggaatttgac
agcaagcaatttcgagcgactggcttaaaggatgattatacaaatttatcattaggaacg
cttggcggaggcaatcatttcattgagctcgcaaaggatgaagcggatcgctattatttg
cttattcacacaggctcccgctatgtaggggcaaaggtagccaattggcatcaaaaaaga
gcctatgaaagtttacgccgccaagatttaacggaaaaaatagcggagctgaagcagcaa
gggcgagcccaagaaattcagcgcatgattcaaagctataaagcgcaaaatcctgtaatt
ccaaaggatttagcttatttagagggtgatcttttcgatgattatattcacgatatgaag
attgcccagcagtatgcacgcatgaatcgttggacaatcgctaaaacaattgctgagcat
atggggtggcagtttacagagacatttgatacgattcataactatattgatacggaaaca
atgacattgcggaagggtgctgttcgtgccaataaaggagaaaagctggtcattccaatg
aatatgcgggatgggtcgctgatttgcataggaaaaggcaatgcagattggaattattca
gcgccccatggagcagggcgtatgttttcacgtcgcgccgccaaaaaagccttaaatatg
gacgactttaaagaaaccatgcagggcatttggtcaacttccgtcaatgaggaaacatta
gatgaggctccaatggcctataaaccaatggcagaaattacagctgttattgaggacaca
gtcgatatagtcaaagtgattaagccagtttataactttaaagcaagtgaagctgtaaag
ccttatcaaagaaaaagctag
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