Lysinibacillus macroides: I6G82_18370
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Entry
I6G82_18370 CDS
T08056
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lmac
Lysinibacillus macroides
Pathway
lmac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lmac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6G82_18370 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmac03400
]
I6G82_18370 (mfd)
Enzymes [BR:
lmac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6G82_18370 (mfd)
DNA repair and recombination proteins [BR:
lmac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6G82_18370 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_16
Cas3-like_C_2
RecG_dom3_C
MFD_D3
AAA_22
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QPR67180
LinkDB
All DBs
Position
complement(3736999..3740508)
Genome browser
AA seq
1169 aa
AA seq
DB search
MEILRQLVSQDKHITSFLQEIRSGQTASQLITGLTGSARPVMVDALFEYVKKPIYIVSPN
LLQAQKMVDELAGLLGEEHVYYYPADEFIAADLSVASPELRAERIATLDCLARGKRAVYV
IPVAGLRKVMQPKEHWLRYFLQTAVGEEIDIDVWLQTLVEMGYVRNSMVTTPGEFALRGG
ILDIYPPYLAAPIRIELFDTEVDSIRTFSADDQRSIDKLPKIRILPASEVILTQSERQAL
AGRLETALASSLKKVKKQETKELLYQHIQYDIELLQQGSLPDYVNKYGSLLYEQTAYLGD
YFAHDGLVLFDELGRIQEVMDAWEREEDEWFLSLIEEGKMVHDVKPAFTLKEILAMLPQQ
KLSFSLFSRTFSGITFNKTTSFSCKPMQQFHGQMSLLQSEVERWLLGKFTVLIVVRDSER
VKRVQQMLGEYDIHAALGEPTEPGIYIVDGSLSSGFELPLQRLTVVTEDELFKQQAKKKA
RTQKMTNAERIKSYTEIKPGDYVVHVHHGIGKYIGVETLEVNGTHKDYLHIRYRADDKLY
VPVEQIDLVQKYVASEDREPKLHKLGGAEWKKAKAKVSSAVQDIADDLIKLYAKREAEKG
HAFTPDNDDQRNFEAMFPYEETEDQLRSIVEVKRDMERERPMDRLVCGDVGYGKTEVAIR
AAFKAIQDGKQVAFLVPTTILAQQHYETIRERFQDFAINVGLLSRFRTKKEQTATLKGLK
EGQVDIVIGTHRILSKDLIFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIP
RTLHMSMVGVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGGQVFYLYNRVE
DMARRVEEIQVLVPEARIGFAHGKMTETELESVILSFLEGDYDVLVTTTIIETGVDIPNV
NTLIVHDADRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELG
SGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLQEAIAERQTGVKKEEKPEIEI
LLSVDAYIPDAYIPDGYQKIQMYKRIKAMDQVEEYDEIMEELEDRFGDLPIETERLLRIA
RMKVWGLGAGVVSVKDRQKVITILLSEEGTANVDGSKIIEESMKFERAVGFGMDGMQLKV
TIDERRCGKYQPFDILEELMQIIDQAKKQ
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
gtggaaattttacgacagcttgtgtcgcaggataaacatattacatcatttttacaggag
attcggagcggtcaaactgcatcacagcttattacaggtttaacaggaagcgcacgccct
gtcatggttgatgcgttatttgaatatgtaaaaaagccaatttatattgtttctcctaat
ctattgcaggcacagaagatggttgatgagctggcgggattattaggggaggaacatgtt
tactattatccagctgatgaatttattgcagcagatctttctgtagcctctcctgaatta
cgtgctgagcgtattgcaacactggattgcttagctaggggcaagagggctgtctatgtt
atccctgttgcaggtttacgcaaagtcatgcaaccgaaagagcattggctacgatatttt
ttacaaacagctgtaggagaagagattgatattgatgtatggctacaaacattagtcgag
atgggctatgtacggaattcaatggtgacaacgccaggagaatttgcgttacgtgggggg
atattagatatttatccaccttatttagcagcgcctattcgtattgaattatttgataca
gaagtagattctattcgaacattttcggcagatgatcagcgctctattgataaattgccc
aaaattcgtattcttcctgcatcggaggttattcttactcaatcggaaagacaggcattg
gcaggtcgcttagagacagcactagcctctagtttaaagaaggtaaagaagcaggaaaca
aaggaattgctttatcagcatattcagtatgatattgaattgctacagcaaggaagttta
cctgactatgttaacaaatatggctcattattatatgagcaaaccgcctatttgggtgat
tattttgcacatgatggacttgtcctttttgatgagcttggacgtattcaagaggttatg
gatgcgtgggaacgtgaggaggatgaatggtttttatctttaattgaagagggaaaaatg
gttcatgatgtgaagcctgcctttacattaaaggaaatactcgctatgcttccacagcaa
aagctatcattttccttattttcacgaacattctcaggcatcacatttaataaaacaacg
agcttttcctgcaagccaatgcagcaatttcatggacaaatgtcactgctacaaagcgag
gtggaacgctggctacttggtaagtttacagtattaatcgttgtgagagatagtgagcgt
gtgaaacgtgtgcagcaaatgctgggggaatatgatatccatgccgcactaggggagcca
acagagcctggtatttatattgtagatggaagcttatcgagtggttttgaattgcccctt
caacgtttaacagttgtaacagaggatgagctatttaaacagcaggcaaagaaaaaagca
cgtacgcagaaaatgaccaatgctgaacgtattaaaagctatacagaaattaaacctggt
gattatgttgtccatgttcatcatgggattggtaagtatattggtgtagaaacattagaa
gtcaacggtacacataaggattacctacatattcgatatcgtgcagacgataaattatat
gtacctgtcgaacaaatagacttagtccaaaaatatgtggcctcagaggaccgtgagcca
aagctacataaattaggtggggcagaatggaaaaaggcgaaagcaaaggtatcctctgct
gtacaggatattgctgatgatttaattaagctttatgcgaagcgtgaagcagaaaagggg
catgcttttacgcctgataacgatgatcaacgtaattttgaagctatgttcccatatgag
gaaacagaggatcagctacgttctattgttgaagtgaagcgagatatggaacgtgagcgc
ccaatggatcgcctagtttgtggtgatgtaggttacggtaaaacagaggttgccattcgc
gcagcatttaaagccatccaggatggtaaacaggttgccttccttgtacctacaacaatt
ttagctcagcaacattatgaaacaatccgagagcgcttccaagactttgctattaacgta
gggctgttatctcgtttccgtactaaaaaagagcaaacagcaacattaaaagggctaaaa
gaagggcaagtcgatattgttataggaacacatcgtattttatcgaaggatttgatattc
caagatcttggcttattgattgttgatgaagaacaacgcttcggcgtaacccataaggaa
aaaattaaacaattaaaaacaaatgtcgatgtcttaacgttgacggctacacccatccca
agaacacttcatatgtcaatggtgggtgtccgtgatttatctgttattgagacaccccca
gccaatcgttttcccgtgcaaacttatgtgatggagcatagtggagcattagtgcgagag
gcaatcgaaagagaaatggcacgtggcggacaagtgttttatctctataatcgtgtagag
gatatggctcgaagggttgaggaaattcaagtgcttgttccagaggctcgtataggcttt
gcacatgggaaaatgacagagacggagttagaatcggttattttatcctttttagagggt
gactatgatgtacttgtgacgacaacaattattgagacaggtgttgatattccaaatgtc
aatacattaattgtccatgatgctgatcgtatgggcctagcacagctttatcaattacgt
ggacgtgttgggcgttcaaatagggtagcctatgcctactttatgtatcaacgtgataaa
gtattgacagatgtagcagagcaacgattacaggcaattaaagaatttacagagcttggc
tcaggctttaagattgcgatgcgtgatttatcgattcgcggagctgggaatttgctcgga
gcgcagcagcatggctttattgattctgttggctttgatttatattcgcaaatgctgcaa
gaggcaattgctgaacgtcaaacaggtgtgaaaaaggaagagaagcctgaaattgaaatt
ttattgagcgtggatgcttatattcctgatgcctatattccagatggctatcaaaaaatc
caaatgtataaacgcattaaggcaatggatcaggtagaggaatatgacgaaatcatggag
gaattagaggatcgatttggcgatctcccaattgaaacagagcgcttgctacgaatcgcc
cgcatgaaggtatgggggttaggtgcaggtgtagtatctgtaaaggataggcaaaaagtg
ataacgatactgttatctgaggaaggcacagccaatgtggatggcagtaaaattattgaa
gagtctatgaaattcgagcgtgctgttggctttggtatggatggcatgcaattaaaagta
acaatagatgagcgccggtgtgggaaataccagccgttcgatattttagaagagctgatg
cagattattgatcaagctaaaaagcaataa
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