Lysinibacillus macroides: I6G82_22540
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Entry
I6G82_22540 CDS
T08056
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lmac
Lysinibacillus macroides
Brite
KEGG Orthology (KO) [BR:
lmac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lmac03009
]
I6G82_22540 (rlmD)
Enzymes [BR:
lmac01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
I6G82_22540 (rlmD)
Ribosome biogenesis [BR:
lmac03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
I6G82_22540 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
TRM5-TYW2_MTfase
PrmA
MTS
Cons_hypoth95
RrnaAD
TPMT
Methyltransf_15
Methyltransf_11
Methyltransf_12
N6_N4_Mtase
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
QPR70496
LinkDB
All DBs
Position
4598795..4600165
Genome browser
AA seq
456 aa
AA seq
DB search
MSAPVKKNERLSVYIEDLTHDGNGVAKVDGYPLFIQGALPNETAEIHVVKTLKNYGFAKV
QEILKPSPDRVEAPCDYFKQCGGCQLQHLSYEGQLKWKENMVRNVMQRIGKITAPVLPVK
GMEEPWHYRNKAQIPFATNEAGQAIAGFYKTKTHSIVDMERCLIQTGEADAILAGLKKEL
ATIGIRPYNEQTHEGMLRHVVIRKARATGQIMVVLVTKKKKFSQKEAAIAVIQKLVPNVT
SIMQNINSAKTNVIFGDETINLWGKDVIIDTIGDVRFEISARSFYQVNPVQTEVLYQQAL
DYADLQGNERVIDAYCGIGTISLFLAQQAKAVMGVEIVPQAIEDAKRNAALNGFTNTYFE
AGPAEEVIPRWYKEGKEADVLVVDPPRKGCDEALLKTILEQRPKRVVYVSCNPATLARDL
RILEDGGYQTQEIQPVDMFPHSTHVECVVLMSRVEK
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcacctgtgaaaaaaaatgaacgactctcagtttatatagaagatttaacgcat
gatggcaatggtgtcgctaaggttgatggttatccattgtttattcaaggcgcattgcca
aatgagacggctgaaattcatgtagtaaaaacattaaaaaattatggctttgcaaaagtt
caagaaattcttaagccatcaccagatcgtgtagaagcaccgtgtgactacttcaagcaa
tgtggcggctgtcagctacagcatttgtcctacgagggacagttaaaatggaaggaaaat
atggtgcggaatgtcatgcagcgtattggcaaaatcactgcacctgtgcttcctgtaaaa
ggtatggaagagccttggcattatcgtaacaaagcccaaattccattcgctacaaatgaa
gcaggacaagcaattgcaggtttttacaaaaccaaaacacatagcattgtggatatggag
cgctgcttaattcaaacaggagaggcagatgcaatactggcaggcttaaaaaaagaattg
gcaacaatcgggattcgcccatataatgagcaaacacatgaggggatgttacgccatgtt
gtgattcgtaaagcacgagcaacaggtcagatcatggttgtcctcgtcacgaaaaagaaa
aagttctctcaaaaagaagcagccattgcagtgattcaaaaacttgttccgaatgttaca
tcgattatgcaaaatattaatagcgctaaaacaaatgtcatctttggcgatgaaacaatc
aatctgtggggcaaagatgtgattattgatacaattggcgatgtgcgctttgaaatctca
gcgcgttccttctatcaggtgaatccagtgcaaacagaggtgctttatcagcaggcactt
gattatgcagatttgcaggggaatgaacgagtaattgatgcgtattgtggtattggtaca
atctccttattccttgcacaacaagcaaaggctgtaatgggtgttgaaatcgtcccacaa
gcaattgaggatgccaagcgaaatgcagcgttgaacggttttacaaatacttattttgaa
gctggcccagcagaggaagtcattccacgctggtacaaagagggtaaggaagctgatgtc
ctcgttgtcgacccaccgcgcaaaggctgtgatgaagctttattaaagaccattttagag
cagcgcccaaaacgagtagtctatgtatcctgcaacccagccacactagcacgcgacctg
cgcattttagaggatggtggctatcaaacgcaggaaattcagcctgtcgatatgtttcca
cattcgacacatgtggagtgtgttgtcttgatgtcaagagtggagaaataa
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