Secundilactobacillus malefermentans: FGL90_00695
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Entry
FGL90_00695 CDS
T06836
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lmae
Secundilactobacillus malefermentans
Pathway
lmae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FGL90_00695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmae03019
]
FGL90_00695
Messenger RNA biogenesis [BR:
lmae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FGL90_00695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
GPW_gp25
Motif
Other DBs
NCBI-ProteinID:
QEA30817
LinkDB
All DBs
Position
complement(141403..143142)
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AA seq
579 aa
AA seq
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MSSKIKISPFGGVRENGKNMYVVDINDGIYILDCGLQYPENELLGIDIVIPDFSYLEENK
DRIVGVFLTHGHADAIGALPYFLNKFNVPVFGSKMTIELAKLSVESNETTKKFSDFHVVD
ANAEIDFGDVKVSFFRTTHSVPGSMGIVLDTDEGEIVYTGDFKFDQTAGRDFQTDYGRLA
EIGQKGVLALLSDSANAENPAETTNERDIAKYVEETFRYHEGRIIVASVASNILRIQQVF
NAAANTNRRVLLTGHDLEKIVNTALRLNKLILPVDNLLVEEADLDKLAPEETIILQTGKM
GEPIKALQRMANQQEKGPQIQAGDLVFITTTPSHAMETTVAKTRDMIYRAGAEVISISDE
LNSSGHASKNDLQLLINILKPKYLVPIQGEYRLLEANSEAAQEVGIKKENIFMTAKGDVI
TYDDGEMHLGSSINVGNTMIDGIGVGDIGNIVLRDRKVLSEDGIFVAVVTIDRKKKKIIS
EPKITSRGFVYVKANKNLMHESSDIIKKVVQANLDHKEFDWGHLKQDVRENLNHYLFDQT
KRHPVILPVIMEVNQHHRSKTTKEHENTAAVENKKDESK
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtaaaattaaaattagcccgtttggtggcgtacgtgagaacggcaaaaatatg
tatgttgttgacattaatgatggtatctatattttggattgtggacttcagtacccggaa
aatgaattattgggaattgatattgtgattcctgatttttcttatcttgaggaaaataaa
gatcgaatcgtcggcgtgttcttaacccatggccatgcagatgcaattggggcacttcca
tactttttaaataaattcaatgtgccagtttttggctcaaaaatgacaatcgaattagcc
aagttgtctgtggaaagcaatgaaacaaccaaaaagttctctgattttcacgttgtagat
gcaaatgctgaaattgattttggagatgtgaaggtttcgtttttccgaacaacccattct
gttcctggatcaatgggaattgttttggatactgatgaaggagaaattgtctatactggg
gactttaagtttgaccagacagcaggtcgtgattttcaaacagattacggtcgattagct
gaaattggtcaaaagggtgtattggcgcttttaagtgactctgctaatgcggaaaatcca
gctgaaacaaccaatgaacgtgatatagctaaatatgttgaagaaacttttagatatcat
gaaggacgtattattgttgccagtgtagcctccaatattctccgaatccaacaggtcttt
aatgcggctgctaatacaaatcgtagagttttattaacaggccatgacttagaaaaaata
gtaaacaccgctttacgtttaaataagttgatattacctgttgataatctattagttgag
gaagcagacctagataaattagcgcctgaagaaacgattatattgcagacaggaaaaatg
ggtgaaccaataaaagctctccaaagaatggctaatcaacaggagaagggaccccagatt
caagcaggggatttagtctttattacgacaacaccttcacatgcaatggagacaactgtt
gctaaaacgcgggatatgatttaccgtgctggtgcagaagtgatttctatctctgatgag
ctaaattcttcaggacacgctagtaagaatgatctacaacttttgattaatatcttgaag
cccaagtatttagttcctattcaaggtgaatatcgtttattggaagcaaattcggaagct
gcgcaagaagttggcatcaaaaaggaaaatattttcatgactgctaagggtgacgttatc
acgtatgatgatggcgaaatgcatttaggcagtagtattaacgttggcaatacgatgatt
gatggtattggtgttggcgatattggaaatattgtattgcgtgatcgaaaagtgctttcg
gaagatggcatatttgttgctgttgtgacaattgatcgaaagaaaaagaaaattatttca
gaaccaaagattacgtcgagaggttttgtttatgtaaaagctaacaaaaacctcatgcat
gaaagttcggacatcattaagaaagtagtccaagcaaatctagatcataaagaatttgat
tggggacatttaaaacaagatgttagagaaaatttaaatcactacttgtttgaccaaaca
aaacgtcatccggttattttgcccgttatcatggaagtaaatcaacatcatcgcagtaaa
acaactaaggaacacgaaaacacagctgcagtagaaaacaaaaaagatgaatctaaataa
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