Secundilactobacillus malefermentans: FGL90_00820
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Entry
FGL90_00820 CDS
T06836
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lmae
Secundilactobacillus malefermentans
Pathway
lmae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FGL90_00820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmae03019
]
FGL90_00820
Messenger RNA biogenesis [BR:
lmae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FGL90_00820
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QEA30842
LinkDB
All DBs
Position
164851..166527
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AA seq
558 aa
AA seq
DB search
MTKLNIKNNEAAIYGVGGLGEIGKNTYGIQFQDEIILVDAGIKFPEDELLGIDYVIPDYQ
YLVANQQKIKALVITHGHEDHIGGIPYLLKDLHVPVYAGPLALALIKNKLDEHGLLKTTE
LHTIDEDTVLKFRKMSVSFFRTTHSIPDTLGIAVHTPVGVIVHTGDFKFDLTPVTHQPPN
LQKMARLGEEGVLCLMADSTNAERPIWTKSEKWVGKSIRKIFDQVEGRIIFATFASNISR
IETACEVALAHGRKVAVFGRSMEAAIVNGRELGYLNLPDEAIVDANDIKSMPANKVMILC
TGSQGEPMAALSRIANGTHRQISIQPDDTVVFSSNPIPGNTISVNHVINELEEAGARVIH
GKVNNIHTSGHGGQEEQKLMLRLMQPKFFMPIHGEYRMLKIHTELAEECGVPLDHSFIME
NGDVLALTKDSARMAGHFNAGDVYIDGNGIGDIGNVVLRDRQLLSEEGLVVVVATINLKD
KEIQAGPDLLSRGFVYMRESGELLNEGRRLVFRTIRRAMRSNKANEASIRNAIIDDLQNF
LFEKTERHPMILPMLIMK
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagttaaatatcaagaataacgaagctgccatctacggtgttggtggcctcgga
gaaattggtaagaatacttatggtatccagtttcaagatgaaataattcttgtagacgct
ggtattaaattccctgaagatgagcttttgggaattgattatgttattcctgactatcaa
tatctagttgctaatcaacaaaagattaaagcactagttattactcatggtcatgaagat
cacataggtggtattccttacctactgaaagacctgcacgtgccagtttatgctggaccc
ttagcacttgcattaattaagaacaagctcgacgaacacgggttattaaaaacaactgaa
ttacacacaattgatgaagatacggttctaaagttcagaaaaatgagcgtttcatttttc
agaaccacccactcaattccagatacgcttggaattgccgtccatacaccggttggcgtt
attgtgcatactggagattttaaattcgatcttacgccagtaacgcaccagccaccgaat
cttcaaaagatggcgcgcttaggtgaagaaggtgttctttgcttaatggctgatagcacc
aatgccgagcgccctatttggactaaatccgaaaaatgggtcggaaaatcaattcgtaaa
atatttgatcaagtagaaggtagaattatatttgctacctttgcatcaaatatttcgcga
atcgaaacagcttgtgaagttgcccttgcacacggtcgaaaggttgcagtgtttggtcgt
agtatggaagctgcaatcgttaatggtcgtgagttaggctatcttaatttgccggacgaa
gcaattgttgatgccaacgacataaaatcaatgcccgctaataaagtcatgattttatgt
acgggatctcagggtgagcctatggccgccctctctagaattgcaaatggtacccaccgt
caaatctcaattcaacccgacgacacggttgttttctcaagtaatcccatccctggtaac
acgattagcgttaaccacgtgattaatgaactagaggaagctggcgctcgtgtcattcat
ggcaaggtaaacaacattcatacttccggtcatggtggacaagaggaacagaaactaatg
ctacgcttgatgcagcctaagttcttcatgccaattcatggtgagtatcgaatgcttaaa
attcatactgagcttgcagaagaatgtggtgttccccttgatcatagctttatcatggag
aacggtgatgtcttggcgctcacaaaggattctgctagaatggcaggacactttaatgcc
ggcgatgtttacatcgatggtaacggaattggcgatatcggaaacgttgtacttcgtgac
cgtcagttactttccgaagaaggccttgtcgtcgttgttgcaacaatcaacctgaaggat
aaagaaattcaagctgggcctgatctcttatcacgtggatttgtttatatgcgtgaatct
ggagaattgttaaatgaaggtcgacgtcttgtctttagaactattcgaagagcgatgcgg
tctaataaagctaatgaagcttccattagaaacgcaattatcgatgatttgcagaacttc
ctgtttgaaaaaacagaacgtcaccctatgattctaccaatgctaattatgaaataa
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