Secundilactobacillus malefermentans: FGL90_07010
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Entry
FGL90_07010 CDS
T06836
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lmae
Secundilactobacillus malefermentans
Pathway
lmae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lmae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FGL90_07010 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmae03400
]
FGL90_07010 (mfd)
Enzymes [BR:
lmae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FGL90_07010 (mfd)
DNA repair and recombination proteins [BR:
lmae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FGL90_07010 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
Imm41
Motif
Other DBs
NCBI-ProteinID:
QEA31954
LinkDB
All DBs
Position
1456317..1459841
Genome browser
AA seq
1174 aa
AA seq
DB search
MNIEELMIETPEYQQIRSQIKPNTRQLITGISGSARTLFIKSMLADLSKPILLVTDTLFH
ADQLVDDLSNVLADDQLFEFPVEEMLAAEVATSSPDYRAQRINALKALIDGKPIVVVVAV
SGVKRYLPNLTDFKSNILTIKVGEEYDLEVLQKSLNQMGYLHQKLVDAPGDFAVRGSIVD
VYPLNAENPIRIDFFDTEVDSMRQFDSTNQRSIENVDEVTLLPATDLLIPNEKRPIAAQK
LQAALDKALKDKTNDEQKDQLEKYISPLIDEVNNGSTDPELLIFADYLFDGRTSVIDYLS
NEGVVLFDDYTRLVEADQQLEEDEASWVTDKLKSQQVFINQQFEIPLKDALKTDEHAKIF
MALFQKGMGNLRFDQLTAWQTRAMQRFFGQMPLLKAELDRWHKLKQTVVIMVKDEARLNK
VAATLQDFKMQATLTGSNNLQKGAVQLITDQLQTGFELPSAGLVVITESEMFKKVTKHRR
RRQTLANAERLKSYTDLKPGDYVVHVNHGIGRFEGMQTLEVDGVHQDYMTIDYQKNAKIF
IPVTQLNLIQKFVSSEDKKPRVNKLGGSEWAKTKSKVASKIEDIADDLVELYAKREAEKG
FAFPRDDAYQEQFDNDFPYSETPDQLRSIEEIKHDMERVRPMDRLLVGDVGYGKTEVALR
AAFKAIEAGKQVAFLVPTTILAQQHFDTMTNRFEGYPITIGILSRFQTTKEVNQTIKGLE
DGTVDVVVGTHRLLSKDVKFKDLGLLLVDEEQRFGVKHKERIKEIRSDVDVLTLTATPIP
RTLHMSMLGVRDLSVIETPPANRFPIQTYVMEQNAGALQDGIHREMQRGGQVFYLHNRVS
DIEKTVSQIKALVPDAEVAFIHGKMTEAQLEGVLYDFVRGEYDVLVTTTIIETGIDMPNV
NTLFVENADHMGLAQLYQLRGRIGRSNRVAYAYFMYQQNKVLTEVSEKRLEAIKDFTELG
SGFKIAMRDLSIRGAGNLLGKQQHGFIDSIGYDLYSQMLADAVAKKQGKAKKARSDATLE
LGIEAYLPSTYIEDEQQKIEMYKRIRQVTDDEEYYEIEDDLIDRFGEYPMPVANLLKISH
LKMQADEALIEKIRHLNDGLIVTLSLKGSRLISGEDIFKALSNTKLKATVGLSNEKMIVK
LIIQPKMTEADWLAQLIDFTVGLRKLVLTNSESK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttgaacattgaagagttgatgattgagacccccgaatatcaacaaattcgttctcaaata
aaaccgaacacccgacaactcataactggcatttcgggatctgcgcgaacgttgtttatt
aagtcaatgttggctgacttatcaaaaccaattttattggtaactgatacactttttcat
gctgaccaattggtggatgatttgagcaacgttttggcggacgaccaattatttgaattt
cctgttgaagagatgctggcagctgaggttgcaaccagttctcccgactatcgggcacaa
cggataaatgcattaaaggcactgatcgatgggaaaccaatcgttgtcgtcgttgcagtt
tcgggagttaaacggtatttacctaatttaacggattttaaatctaatattttaacgatt
aaagtcggcgaagaatatgatttggaagtgttgcaaaagagtttaaatcaaatgggctac
ctgcaccaaaaactggtggatgcgcctggagactttgctgttcgaggctcaatcgttgat
gtttatcccctcaatgcggagaatccaattcgaattgacttctttgatactgaagtcgat
tcaatgcgccaatttgattcaacaaatcaacgcagtattgaaaacgttgacgaagtgaca
cttttgcccgcaacggatttgttgataccaaacgagaagcgtccgatagcagcccagaag
ttgcaagctgctttggataaagcactgaaagataaaacaaatgatgagcaaaaggatcaa
ctagaaaaatatattagtccattaattgatgaggttaacaatgggagtacagatcccgag
cttcttatatttgcggactacctttttgatggacgaacctcagttattgattatctttca
aacgagggtgtcgtgctttttgatgactacacccgtttggtggaagctgatcaacaatta
gaggaagatgaagcaagttgggtcactgataaacttaagagtcagcaggtctttatcaat
cagcaatttgaaattcctttaaaggatgcactaaaaactgacgagcacgccaaaattttc
atggcgctttttcagaagggaatgggaaaccttcgctttgatcaattaacggcctggcag
acgcgggcaatgcaacgattctttggtcaaatgcccctgctgaaagccgagttggaccgt
tggcataagctgaaacaaacggttgtgatcatggttaaagatgaagcacgtttaaacaaa
gttgcggcaactttacaagactttaagatgcaagcaacgctgaccgggagcaacaatttg
caaaaaggggccgtccaactcattacggatcaattacaaaccggttttgaattaccaagt
gccggattagtggttattacagaatctgaaatgtttaaaaaggtgaccaagcatcgaaga
cgacgtcaaacgcttgcgaatgcggaaagacttaagagttatacggatttgaagccgggt
gattacgttgttcacgttaatcatgggattggccgatttgaagggatgcaaacactcgaa
gttgacggtgttcatcaggattatatgacaattgattaccaaaaaaatgccaaaatcttt
attcccgttacgcagttaaatttgattcaaaaattcgtttcatcagaagataaaaaacca
cgagtcaacaagctcggtggttcagaatgggccaaaactaagagtaaggtcgcctcaaag
attgaagacattgcggatgatttagtagaattgtatgccaaacgagaagcggaaaaagga
tttgcctttccacgagacgatgcctatcaagaacaatttgataacgatttcccatattca
gagacaccggaccagttgcggagtattgaggaaataaagcacgacatggaacgagtaaga
ccaatggatcgcttattggttggggatgtgggttacggaaaaacggaggttgccttacga
gctgcttttaaagcaattgaggccggcaagcaagttgcctttcttgttccaacgacgatt
ctagcccaacaacactttgatacaatgacgaaccggtttgaaggatacccaattacgatt
ggcattctttctcgttttcaaacaacgaaggaagtcaatcaaaccattaaggggttagaa
gatggcactgtggatgtcgtcgtgggtacccatcgactcttatccaaagacgttaagttt
aaggatttaggcctccttttagtggatgaagaacagcgctttggcgttaaacacaaagaa
cgaatcaaggagattcggtcagatgtggatgttctgacgctaacggcaacaccaattcct
aggactttgcacatgtcgatgctgggcgtaagagatttatccgttattgagacgccacca
gctaaccgtttccccattcaaacctatgttatggagcaaaatgcgggggcccttcaagat
ggtatccatcgagaaatgcagcgcgggggtcaagtcttctatttgcataaccgagtgagt
gatattgagaaaactgttagtcaaataaaagcactggttccggatgcagaagtggccttc
attcatggaaaaatgaccgaggctcagttagagggcgtgctttatgattttgtccgtggt
gaatacgatgtgcttgtgacaaccaccatcatcgaaaccgggatagatatgccaaacgtt
aacacgttatttgttgaaaatgctgatcatatgggactggcacagttataccaattacga
ggccgaattggtcgaagtaaccgggttgcatacgcctactttatgtatcaacaaaataag
gtgttaacagaagtgagtgaaaaacgcctcgaagcaattaaagattttactgagttaggc
tcaggatttaagattgccatgcgagatttatcaattcgtggcgccggaaacctgctaggt
aagcagcaacacggctttattgattcaattggatatgatttatattctcaaatgttagct
gatgcggtagctaaaaagcagggtaaggcgaagaaggcccgctcagacgcgactttggag
cttggaatcgaagcctatctgccatcaacttatattgaagatgagcaacaaaagattgaa
atgtacaaacgaattcgtcaagttactgatgatgaagagtattacgaaatcgaagatgac
ctaattgatcgatttggagaatatccgatgcccgtggctaacttgttgaagattagtcat
cttaaaatgcaggcggatgaggccctcattgagaagattcgtcatcttaacgatgggttg
attgtcaccctgtcgcttaaggggagtcgactgattagtggcgaggatatttttaaggcg
ttatccaatacgaaattaaaagcaacggttggcttatcaaacgaaaaaatgattgttaag
cttatcattcaacccaagatgactgaggcagattggttagcgcagttgattgactttaca
gttggattaaggaaattagttttgactaattcagaaagtaagtag
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