Secundilactobacillus malefermentans: FGL90_08400
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Entry
FGL90_08400 CDS
T06836
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lmae
Secundilactobacillus malefermentans
Pathway
lmae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FGL90_08400 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmae03019
]
FGL90_08400 (rny)
Messenger RNA biogenesis [BR:
lmae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FGL90_08400 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
OmpH
Swm2
KH_2
PIGBOS1
Motif
Other DBs
NCBI-ProteinID:
QEA32201
LinkDB
All DBs
Position
1721561..1723120
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AA seq
519 aa
AA seq
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MTVSVIILAIIAIVVGIGIGYLIRKSIFEKRMVAAKNTAEGILADAKKKAETDTKEKLLE
AKDESHRYRAEVESELKKRRAEVQKQEDRLLQREEALDRKDNAFEKRESSLSKRENKLTN
EQQDLVKKQQQADSLIEKRQSAVEEVAALSRDEARDLIISETQASLAKEQAQMIKESEAE
TKKTVTQDAKNLIVEAIERSSADMVSETTVSVVTLPNDDMKGRIIGREGRNIRTLETLTG
IDLIIDDTPEAVVLSGFDPIRREVAKIALEKLIQDGRIHPARIEEMVEKARRELDEHIQD
IGEETTFDLGIHSMHPDLVKLVGKMNFRISYGQNVLSHSIEVAKLAGAFAAELGEDVTLA
KRAGLLHDIGKAVDQDTEGSHASVGADLAKKYKESPVVINAIAAHHGDVASKYIIAELVA
VADKISSARPGARSDSLDSFIHRLEKLEDIGNQFDGVEKTFAIQAGREVRVIVKPDKITD
LDAIVLARDIKKRIESELDYPGHIKVSVIREVRSVEYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgactgtttcagttataatcctcgcaatcatcgctattgttgttggtattggtattggc
tatttaattcgtaagtcgatttttgaaaaacgaatggtagctgctaaaaatactgctgaa
ggaatcttggctgacgcaaaaaagaaggctgaaacagatacaaaagaaaaactgttagaa
gccaaagacgaaagtcatcgttaccgtgcagaagttgaatctgaactcaagaaacgccgt
gctgaagttcagaaacaagaagatcgccttttacaacgtgaagaggcgctcgaccgcaag
gataacgcttttgaaaaacgtgaaagctcattaagcaagcgagaaaataagcttactaat
gaacagcaagatttagtaaagaagcaacaacaagcagactcacttatagaaaagcgacaa
tcagctgttgaagaagttgcagccttatcacgtgatgaggctcgtgacttaatcattagt
gaaacccaagcaagtcttgccaaagaacaagcccaaatgattaaggaaagtgaagctgaa
accaaaaagacagtcacgcaagacgccaagaatcttattgtcgaggcgattgagcgtagt
tctgctgacatggtatcagagaccacagtttctgtggtaacgcttccgaatgacgatatg
aaggggagaattattggtcgcgaaggccgaaacattcgaacccttgaaacgcttactgga
attgatttaattatcgatgatacaccagaagcagttgtgttaagtgggtttgatccaatt
aggcgagaagttgctaagatagcacttgaaaaactaattcaagatggtcgaattcatcca
gctcgtattgaagagatggttgaaaaggctcgtcgtgagttagatgaacatattcaagat
attggtgaagaaacgacatttgatttaggaatccattcaatgcatcctgacttggtaaaa
cttgtcggtaaaatgaattttaggatttcttatggtcaaaatgtgttaagtcattcaatt
gaagttgctaaattagctggggcatttgctgcagaattaggtgaggatgtaacattagca
aagcgcgcaggattattgcacgatattggtaaagcagttgaccaggatactgaaggctca
catgcttcagtgggggcggacctagctaagaagtataaggaaagtccagtagtgattaat
gcaattgcagctcatcatggtgatgtagcttccaagtacattattgctgagttggttgct
gttgcagataaaatttcttctgcaagaccaggtgctagaagtgattctcttgatagcttt
atccatcgtcttgaaaagttagaagacattgggaatcagtttgacggtgttgaaaagaca
tttgccattcaagccggaagagaagttcgggtcattgtgaagcctgataaaattaccgat
ttagacgctattgtcttagcacgggacattaaaaagcggattgaaagtgaactggattat
ccgggacacattaaggtatcagtaattcgagaggttagatcagttgaatatgctaagtag
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