Candidatus Lucifugimonas marina: GKN94_01560
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Entry
GKN94_01560 CDS
T10105
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lmaj Candidatus Lucifugimonas marina
Pathway
lmaj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lmaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GKN94_01560 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmaj03400
]
GKN94_01560 (mfd)
Enzymes [BR:
lmaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GKN94_01560 (mfd)
DNA repair and recombination proteins [BR:
lmaj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GKN94_01560 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WFG34418
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All DBs
Position
338589..342161
Genome browser
AA seq
1190 aa
AA seq
DB search
MSLSGLLPLLGETEQFAALLNSLRAPRAQAAVIAPGPATECTVAALWRESGAPVFVLTPN
PESARKLHDRLFTWLGDDAPVFHFSESEDIPFERYVPDRGASHNRLRALAAMRGEVKGAK
QPLVICSVNAASQATLERPVFDSSTHTLSVRNRIKLDPLIKQWVEMGYVHEPTVEIHGTF
SRRGGILDIFPVSRDRPVRIELFDDEIESIRHFDPGTQRSAGKVRTVTIPPALETLPRLA
DQDRVQEQLGKMDLIGTSEEAQRRIPSELSHALEGEVLDEISFYAGFFNLGNVFDFLPAE
SLMVVLRPGAIEETARGADRRMSTLREAKEKRGDVPIGFAQPHIEWGFISDAIDARPKSV
TLSPWGIDAESLPGGSMPLPLKLPTLVSSGVETALEVVRKGIPEKKRTVVITNHAQRFHE
LAEEAGVETSLVKTIDTAPEPGEIHVVTGHLLTGFSIEAADGTEVSILSDAEVFGIQKER
RRVRKRPIRKGPALETLKPNSFVVHVEHGVAKFLGTEVMGSEGQEYLVLEYAEDDKLYVP
TEHLDRIQLYHGTADSSPKLTRLGTQEWSKARARAKKATEQLAGELIALYASRKVATGFA
ATPDTPWQDSLEASFPFEETPDQLTTIEAVKADMESSQPMDRLVCGDVGYGKTEIALRAA
FKTVQSGRQVAILVPTTVLAQQHLETFSERLEPFPATVDMLSRFRTDKQQKQTIKGVTDG
SVDIVIGTHRLLQKDVRFKDLGLVIIDEEHKFGVSHKERLKRLRTQVDVMTVSATPIPRT
LHMSLAGVRDMSTIETPPEERLPIKTYVSEESDDLTREAILRELDRGGQVFYLHNRVKDI
ELVANKLQKLVPEANVQIGHGQMGEDELEKVMAAFDRHEFDVLLCTTIIESGVDLPNANT
LIVDRADMFGLSQLYQIRGRIGRGTNRAYAYMMVPRAKALTEQAEQRLNTILAATELGAG
YQIALRDLEIRGIGNLLGAEQSGQISAIGFDLYTKLLADAVRQLKEADGTDGEVEPAPPE
FSTVRVDIGIDARIPDSYIEDLAQRLSIYQRLARMQTVEEINDIDEEIRDRFGPMPTHVK
LLMKSTHMRVMAESVGVELISAKETRATMTLSQPTGGAREPLQKQLGRGVDVGHMQIRVD
IDRDDPEWIDELMAVMDQLKMFQERMIQMMEMAAAMEAEAAAGASPMSAG
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgtcggggttgctcccgctgcttggcgaaaccgagcagtttgcggcgcttcta
aatagcctccgtgctccaagagcacaggcggcagtgatagcaccaggccccgctaccgaa
tgcacggtggcggcactttggcgcgagtctggcgcgcctgttttcgttttgactcctaat
cctgagtcggctcgcaaactgcatgaccgcctatttacatggctcggcgatgatgctccg
gtgttccatttttccgaatcggaagacattccgttcgaacgatatgttccagatcgtgga
gccagtcacaaccggttgagagctctcgctgcaatgcgtggcgaagtgaagggtgcaaag
cagcctttagttatttgttcggtaaacgctgcatctcaagcgactctggaacgaccagta
tttgattcttccacgcacacacttagcgttcgaaatcgaatcaagcttgatccgctgatc
aagcagtgggtcgaaatgggctacgtccatgagccaacggtagaaattcacggtacgttc
tcacgccgaggcggaattctcgatatcttccctgtttctcgtgacaggcctgtgcgaatc
gaactgttcgatgatgagatcgaaagcatcaggcactttgatccgggaacacagcgttcg
gcgggcaaggttcgtacggtcactattccaccagctttggaaactcttccccgtcttgcc
gaccaagatcgtgttcaagaacagcttggcaagatggacctgattggtacatcggaagaa
gcgcagcgtcgtattccttccgaactcagccacgcactcgaaggcgaagtactggacgag
atatcgttctacgccggcttctttaatctaggaaacgtattcgacttcctgcctgccgaa
agcctgatggttgtactccgcccgggagcaatcgaagagactgcacgcggtgcggatcga
cgaatgagcacgcttcgcgaggctaaagagaagcgcggtgatgtgccgattggatttgca
cagccccacatcgagtggggattcatttctgacgccatcgacgctcgacccaagagcgta
actctctcgccgtggggtatcgatgctgaatcgctgcctggtggttcgatgccgctgccg
ttgaagctgccgactctcgtaagtagtggagtcgaaactgcgttagaggttgtccgaaaa
ggtattcccgagaagaagcgcacggttgttataacgaaccacgcccagcgtttccacgaa
cttgccgaagaagctggcgtcgagacgagtctggtcaagaccatcgataccgctcctgag
cccggtgagattcacgttgtaaccgggcatttgctcactggattctcgatagaagctgct
gacggtaccgaagtttcgattcttagtgatgccgaagtatttggtatccagaaagaacga
cgccgtgtgcgcaagcgtcctatccgaaaaggacccgcactcgaaacactgaaaccgaat
tcgtttgtagttcacgttgaacacggtgttgcgaaattcctcggtaccgaggtgatgggg
tcagaaggtcaggaatatctcgttctcgaatatgccgaggatgacaaactttacgttcct
accgagcatctagatcgtatccagctctatcacggcacagccgactcttctccaaaactc
actcgattgggtacgcaggagtggagcaaggcgcgagcgcgagctaagaaggcaactgag
caactcgctggtgagttgatcgccctgtatgcatctcgaaaagttgccactggatttgcc
gcaacgccagatactccgtggcaggattcgctggaggcaagcttcccgttcgaagaaacc
cctgaccagctaacgacaatcgaagctgtcaaagccgatatggaatcatcgcaaccgatg
gatcgattggtctgtggtgatgttggttacggaaagacggaaatcgctttgcgagcagcc
ttcaagacagttcaatcaggtcgtcaggtagcgattctcgtgcctacaactgttctcgcc
cagcagcaccttgaaactttctcagagcgacttgagccgttccctgcaaccgtcgacatg
ctttcgagattccgcaccgacaagcagcagaaacagacaatcaagggcgttaccgacggc
agtgtcgacattgtgatcggcacgcatcgcctgctgcagaaagatgttcggttcaaagac
ctcggacttgtgatcatcgacgaagaacacaagtttggtgtttcgcacaaagagcgactt
aagcgacttcgaacgcaggtcgatgtgatgaccgtgagcgctacaccgattcctcgaaca
cttcatatgtcgctggctggtgttcgcgatatgagtacgattgagacgccgccggaagag
agactaccgatcaagacgtatgtttctgaagagagcgatgatctaactcgtgaggcgata
ttgcgtgagttggatcgtggcgggcaggtgttctatctgcacaatcgtgtgaaagacatc
gaacttgtagccaacaagctgcaaaaactcgttcctgaagcgaatgttcagattggtcat
ggtcaaatgggcgaagatgaactcgaaaaagttatggcggcatttgatcgccatgaattc
gatgttctgctttgcaccacgattatcgaatcgggtgtcgacctgccgaatgccaatacg
ctaatcgttgatcgagcggatatgttcggcctttcgcagctgtaccagatacgtgggcga
atcggtcgtggcacgaatcgtgcttatgcctacatgatggtcccacgagctaaagcgttg
accgaacaagcagaacagcgcttgaacactattcttgccgctactgaacttggtgccggt
tatcagattgctctgcgtgacctcgaaattcgtggaataggaaatctgctgggtgccgag
caatcgggtcagatctcggctattggattcgatctgtatacgaaattacttgcagacgcc
gttcgtcagctgaaagaagctgatgggactgacggcgaagtcgagccagcaccaccagag
ttctcgacagttcgagtggatatcggaatcgatgcccgtattcccgacagctacatcgaa
gatcttgcgcagcggctgtcgatctaccagcggctggctcgaatgcagacggtcgaagag
atcaacgatatcgatgaagaaattcgtgatcgatttggaccgatgccaactcacgtgaag
cttctgatgaagtcgacgcacatgcgggtgatggctgaatcggttggagtcgagttgatt
agcgccaaagagactcgcgcaactatgactctaagccagcctacgggcggagcacgtgag
ccgttgcagaagcagctggggcgtggtgttgatgttggtcacatgcagattcgtgtcgac
attgatcgtgatgaccctgagtggatcgacgaattgatggcggtcatggatcagctaaaa
atgttccaggaacgaatgatccagatgatggaaatggcagcggccatggaagccgaggcc
gccgctggcgccagcccaatgagcgccgggtag
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