Candidatus Lucifugimonas marina: GKN94_02650
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Entry
GKN94_02650 CDS
T10105
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lmaj Candidatus Lucifugimonas marina
Brite
KEGG Orthology (KO) [BR:
lmaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmaj03032
]
GKN94_02650 (topA)
03400 DNA repair and recombination proteins [BR:
lmaj03400
]
GKN94_02650 (topA)
Enzymes [BR:
lmaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GKN94_02650 (topA)
DNA replication proteins [BR:
lmaj03032
]
Prokaryotic type
DNA Topoisomerases
GKN94_02650 (topA)
DNA repair and recombination proteins [BR:
lmaj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GKN94_02650 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
TMEM252
DUF6892
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WFG34627
LinkDB
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Position
complement(563881..565977)
Genome browser
AA seq
698 aa
AA seq
DB search
MAKTSKRDLVIVESPAKARTVGRFLGDKYVVKASMGHVRDLPKSSLGVDVENMTFEPSYV
NVRGRATLIGEIKKAAKQAESVYLATDPDREGEAISWHLVEAADLGKAKNLKRVVFHEIT
NAAVEEAFSHPRDIDMELVNAQQARRVLDRIVGYKLSPVLWSKVRRGLSAGRVQSVALRI
IVDREREIEAFKPEEFWVITVDLETEVGTRKFTFNANLTSVPGQKGKPVVDNETTAMAIK
KDLNDGKYTVSKVTRKEAKQRPRPPFTTSTLQQQAARSFRYSAQRTMRIAQDLYEGMELG
GGEPVGLITYMRTDSVNLAQNALDEAQAFIKSTYGDEYSTGPKKYKTRSKSAQEAHEAVR
PTSAANTPEKIAQYLSSEQLRLYTMIWKRTIASQMADAIVDNTGVDITATAPNGNEYTVR
ATGSVIKFDGFRKLYIETKDEDAEDDDSKQLPAMNEGDDLKKQTVNADQKFTQPPPRYTE
ANLIRFLEEQGIGRPSTYASIVGTIERRQYVDREKSRFKPTPLGTAVSDLLTEHFSNIMD
MGFTAGMEAKLDSVAEGEQDWVEMLKEFFGPFDKTVEDTMEKAERVDRKKLVQESDEKCE
GGDPLVIRSGRYGKFLSCGKFPECRVSISTRPGERATGEVKENWEIAWKTAMEKCAIVHP
EAAAAAAEEAEAKRASRRKAPKKKAAAKKTKSKAKAKA
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
ttggcgaaaacgtcaaagcgtgatcttgttatcgtcgaatcgccggcgaaggcccgaacc
gtaggccgattcctcggcgacaaatacgtcgtcaaggcatcgatggggcacgtccgagac
cttcccaaaagctcactaggtgtcgatgtcgagaatatgacattcgaaccaagctacgta
aacgttcgtggcagagccacactcatcggcgaaatcaagaaagccgctaaacaggccgaa
tctgtatatctcgcaactgacccagaccgggaaggcgaagccatctcgtggcacctcgtt
gaggcggccgatctcggcaaggcgaagaacctaaaacgggttgtcttccacgaaatcacc
aacgctgctgttgaagaagcattttctcacccccgtgacatcgacatggagctggtcaac
gcccagcaagctcgtcgtgttctcgaccgtatcgtcggttacaagctgagcccggttcta
tggagcaaggtgcgccgtggtctatctgctggccgcgttcagtctgttgcactacgaatc
atcgtcgaccgcgaacgtgaaatcgaagcgttcaagccagaagaattctgggtaatcact
gtcgatctagaaaccgaagttggcacgcgtaagttcacgttcaacgccaacctcacgtct
gtacccggccaaaaaggcaagcctgtcgtcgacaatgagacgaccgcaatggcgatcaaa
aaggacctcaacgacggtaaatacaccgtctccaaggtcactcgcaaagaagccaaacag
cgaccacggcctccgttcaccacaagcacgctccagcagcaggctgcccgatcattccgt
tacagcgcacagcgtacaatgcgaatcgctcaagatctgtacgaaggtatggaacttggc
ggtggtgaaccagttggtctcatcacctacatgcgtaccgactccgtgaacctcgcccag
aacgcactcgatgaagcacaggccttcataaagtcgacttatggcgatgaatattcaact
ggtcctaagaagtacaagacccgaagcaagtcagctcaggaagctcacgaagcagttcga
cctacttcggcagccaacactcccgagaaaattgctcagtatctttcgagcgaacagctg
cgcctctacacaatgatctggaagcgaactatcgcctcccagatggccgatgcaatcgtc
gacaacacaggtgtcgacatcacagcaaccgctccgaacggaaacgaatacacagttcgc
gccaccggatcggttatcaaatttgatggcttccgaaagctctacatcgaaaccaaagat
gaagatgctgaagacgatgacagcaagcaattgcctgcaatgaacgaaggcgacgatctc
aagaagcagaccgtcaatgccgatcagaagttcacgcagccaccgcctcgctacacagaa
gccaacctgattcgatttttggaagaacagggaataggccgacctagcacgtacgcatcg
attgttggcacaatcgaacgaaggcagtacgtcgaccgtgaaaagtcacgattcaagcca
actccgctcggtaccgcggtttcagatctgctcacagagcacttctcgaacatcatggac
atgggcttcaccgctggaatggaagcgaaactcgactccgttgccgaaggtgaacaagat
tgggttgaaatgctgaaagagttcttcggaccgttcgataagacggtcgaagatactatg
gaaaaggcagaacgagtcgatcgcaagaagctggttcaggaaagcgatgaaaagtgcgaa
ggcggagaccctctcgtcattcgtagcggacgctacggcaagttcttgtcgtgcggaaaa
ttccctgaatgccgagtttcaatctcaactcgccccggcgaacgagccactggtgaagtc
aaagagaactgggagatcgcctggaaaactgcgatggagaagtgcgcaatcgtgcacccc
gaagcagcagcggcagcggctgaagaagctgaagctaaacgagcttcacgtaggaaagct
cctaagaaaaaggcagctgccaagaagactaaatcaaaggcaaaagctaaggcatag
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