Candidatus Lucifugimonas marina: GKN94_04595
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Entry
GKN94_04595 CDS
T10105
Name
(GenBank) AAA family ATPase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lmaj Candidatus Lucifugimonas marina
Pathway
lmaj03420
Nucleotide excision repair
lmaj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lmaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GKN94_04595
03430 Mismatch repair
GKN94_04595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmaj03400
]
GKN94_04595
Enzymes [BR:
lmaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GKN94_04595
DNA repair and recombination proteins [BR:
lmaj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GKN94_04595
MMR (mismatch excision repair)
Other MMR factors
GKN94_04595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
ResIII
Ribosomal_L19
Motif
Other DBs
NCBI-ProteinID:
WFG34994
LinkDB
All DBs
Position
1035020..1037353
Genome browser
AA seq
777 aa
AA seq
DB search
MSSISPTENLLSGLSDRQREAVTHTDGPLLIVAGPGSGKTRVMAHRVAYLVGEKGIPPWK
ILAVTFTNKAARELRERCERLVGGGSNELQVRTFHGFCSRVLRSDGEHVGLKPEFTIYDA
DDQARVARRILDQFDIDPKQFPPRALLSVISDAKNNMRSPAQLSRRTETYRDEVAARVYE
AYEGALQRANAVDFDDLLLKTFQLLEGYPEMLEKYQGRFEHLLVDEFQDTNALQFQVARL
LALKSQNICVVGDPDQSIYSWRHAEPSNLTDFQSTFKNTKIVTLDQSYRSTQIILEAADS
VIGNNDGRMEKNLWTENSRGTRITVAEAYNEEEEARLVLEAAKELKNKDGITRNEVAIMY
RVNAQSRAFEVACNREGIPYRLVGGVKFYDRKEVKDILSFLRLISNPADDAALERIINVP
ARGLSARTVTELREVAVSNKVPVLDVILDVMRVNMGDEEPRAYHVDLATRALKSVTAFGD
LITRFIEQSLALDTNELIDLIVERSGYGAMLREDKERGEERMENLQELKASAEQFAGSEE
RGQLTEFLENVALVSDVDGLQGGDDSEVEEEAITLITLHQAKGLEYDAVFLVGLEEGMLP
HSRSVDDPTQLEEERRLLYVGMTRARKRLYMFRAFQRRFRGQSGSQMASRFLLEIPDTLV
TNRDIRGHDRVADRMPDPMWTKRSASTPAPRPATRSAGDAFDAGDKVRHKAFGEGVVVSS
SGTGADTQVTVAFSGQGVKRLMLSYAPLEKIVEEESAQQFDPDEEQIEVQDPDLFAP
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgatttcacccactgaaaacctactttctggtctatctgatcgacagcgcgaa
gctgtcacgcatacggacggccctcttctaattgttgccggtcccggctcgggtaaaact
cgagttatggcgcatcgagtcgcctatctcgttggtgaaaagggcatcccaccgtggaaa
attctcgcagttacgttcaccaacaaagctgctcgtgagcttcgtgagcgctgtgaacga
ttagttggtggtggatcgaacgaacttcaggttcgcacgtttcacggattctgctcgaga
gtgcttcgttccgatggtgagcatgtgggactcaagcctgaatttacgatctacgatgct
gacgatcaggctcgggtcgctcgccgaattcttgatcagttcgacatcgatccaaaacag
ttcccacctcgtgcattgctcagcgttatttccgatgcgaagaacaacatgcgaagtcca
gctcagctgtcacgcaggaccgagacgtatagagatgaagtagcagctcgggtatacgaa
gcctacgaaggcgcgttgcaacgagctaacgcagtcgactttgatgatctgcttttgaaa
acgttccaactcttagagggttacccggagatgttggagaaatatcagggacgttttgaa
catctcttggtagatgagtttcaagacaccaacgctctgcaatttcaggtggcacgatta
ctcgccctaaaaagccagaacatttgtgtagttggtgaccccgaccagtcgatttattcg
tggcgtcatgcagagccatcaaacctcactgacttccagagcacgttcaaaaacaccaag
atcgtgaccctcgaccagagctatcgttcaacccagatcatcctggaagctgccgattca
gtaatcggaaacaacgatggtcgcatggagaaaaatctgtggactgaaaacagtcgtgga
actcgtatcacagtcgccgaggcttacaacgaagaagaggaagcccgtctggttctggag
gcagcgaaggaactaaagaacaaagacggaattactcgcaacgaagtagcgattatgtac
cgagtaaatgctcaatcacgggcgtttgaagtagcgtgtaatcgcgaaggcattccgtat
cgactcgttggcggtgtgaagttttacgaccgtaaagaagtcaaagatattctttccttc
cttcgactcatatctaaccccgccgatgacgctgcgctcgaacgaataatcaacgtgccg
gctcgtgggctttccgcgcgtaccgtgactgagcttcgagaggttgccgtttctaataag
gtgccggttttggatgtgattctcgatgtaatgcgagtaaacatgggcgacgaagaacct
cgtgcgtatcacgtggatctggcgacccgggcacttaaatctgtgactgcatttggcgac
ttaatcactcgatttatcgagcagtctctcgcactagataccaacgaactgatcgatctg
atcgtcgaacgcagcggctacggggcgatgctccgcgaagacaaagaacgtggtgaagag
cggatggagaaccttcaggaattgaaggcttcagccgagcagttcgccggttcagaagag
cgtggacagttgactgaattcctggagaatgttgcgctggtctctgatgtcgatgggctt
cagggcggtgacgattcggaagttgaagaagaggcgattacgctaatcacgcttcaccag
gctaaaggtctcgagtacgacgctgttttccttgtgggccttgaagaaggaatgttgccg
cactcccgtagtgtcgacgatcccacccagttggaagaagagcggcggttgctttacgtg
ggcatgactcgtgctcgaaaacggctgtatatgttcagggcgttccagcgacgattccgg
ggtcagtcgggttcacagatggcttcacgattcttgctggagattccagatactctagtc
acaaatcgcgatattcgagggcacgaccgtgtggccgatcgaatgccagatccaatgtgg
accaagcgttctgcttcgacaccggcaccgcgacccgcaactcgttcggccggcgatgca
tttgacgctggcgacaaggttcggcacaaggccttcggagaaggtgtcgtcgtaagttct
tccggcactggcgccgatacgcaggttactgtcgcattctcggggcaaggcgtgaagcgg
ttgatgctttcgtacgctcctctcgagaagattgttgaagaggaatctgcccagcagttt
gatcccgacgaagagcagatcgaagttcaagatcccgacctgttcgctccatag
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