Candidatus Lucifugimonas marina: GKN94_07870
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Entry
GKN94_07870 CDS
T10105
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lmaj Candidatus Lucifugimonas marina
Pathway
lmaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GKN94_07870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmaj03019
]
GKN94_07870
03009 Ribosome biogenesis [BR:
lmaj03009
]
GKN94_07870
Enzymes [BR:
lmaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GKN94_07870
Messenger RNA biogenesis [BR:
lmaj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GKN94_07870
Ribosome biogenesis [BR:
lmaj03009
]
Prokaryotic type
rRNA helicases
GKN94_07870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SBF_like
P-loop_SecA
Utp25_C
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WFG35612
LinkDB
All DBs
Position
complement(1727884..1729035)
Genome browser
AA seq
383 aa
AA seq
DB search
MRTDLQGTTDWGGLELEKTIVNSLFNMGYEKPSDIQEASIPWQLEGRDVVAQAVTGSGKT
ASFGIPMCNLVEADSRDVQGLVLVPTRELAQQVQRELSLIGRDRGISVVAVYGGEPIAKQ
IRALEQGATIVVGTPGRLKDLMNRRILDLGYVRNAVLDEADEMLDIGFADDMEFILKRTP
STRQTALFSATIPGFIRGLIRRYLDDPRWIQLVNDSKGLETVDEVDQIFYDVASQDKADG
IMEILDDIEEGSQILIFRKMQVGVDRLSKGLAGEGFAIKGIHGGMSQSERNRVMNSFRDG
SLKMLVATNLAARGLDIPTISHVINYDMPENIEEYVHRIGRTARMGKRGTAVSFIGEWDF
ELHEQIVAKIGEDKMIRRQFSFY
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcaccgacttgcagggaaccaccgattggggtggactcgagctcgaaaagaccatc
gtaaattccctgttcaacatgggttacgagaagccttcagatattcaagaggcgtcgatt
ccgtggcagcttgaaggacgagacgttgttgctcaggcggtaaccggatcaggtaagacc
gcatcgttcggtatccctatgtgtaaccttgtcgaagccgattcgcgagacgttcaggga
cttgttctcgtgccaacgcgtgaacttgcgcagcaggttcaaagggaactctctctgata
ggtcgagaccgtggaattagtgttgtagctgtctacggtggagagccgattgccaagcag
attcgtgcactcgaacaaggtgcgacaattgtggttggtactccaggtcgtctgaaagac
ttgatgaaccgacgtattctcgatcttggatacgttcggaacgcagtgcttgacgaagcg
gatgagatgctggatattggctttgccgatgacatggagttcattctcaaacgaaccccg
agcactcgccaaacggctctgttctcagcaaccataccgggattcattcgtggactaatt
cgtcgatacctcgacgacccccgctggattcagttggtgaacgactcgaagggtcttgag
actgtcgatgaggttgaccagatcttctatgacgtcgcttcgcaggataaagccgacggc
atcatggagattcttgatgacatcgaagaaggctcgcaaattctaatcttccgaaagatg
caggtcggagttgatcggctgtcaaagggtcttgcaggcgaaggatttgccatcaaggga
atccatggtggtatgtcgcaatctgaacgaaaccgagtgatgaactcgttccgagacggc
agtctgaaaatgcttgtggcaacgaaccttgccgctcggggattggatatccctaccatc
tcgcacgtcatcaactacgacatgcctgagaacatcgaagagtacgttcaccgaattggc
cggactgctcgaatgggtaaacgtggcacggctgtcagtttcatcggtgagtgggacttc
gaactgcacgagcagatcgtcgccaaaatcggtgaagacaaaatgatcaggcgccagttc
tcgttctattag
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