Candidatus Lucifugimonas marina: GKN94_11585
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Entry
GKN94_11585 CDS
T10105
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lmaj Candidatus Lucifugimonas marina
Pathway
lmaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GKN94_11585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmaj03021
]
GKN94_11585
03019 Messenger RNA biogenesis [BR:
lmaj03019
]
GKN94_11585
Transcription machinery [BR:
lmaj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GKN94_11585
Messenger RNA biogenesis [BR:
lmaj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GKN94_11585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
AAA_25
AAA_22
OB_RNB
ATPase_2
HofP
Motif
Other DBs
NCBI-ProteinID:
WFG36868
LinkDB
All DBs
Position
2533224..2534624
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AA seq
466 aa
AA seq
DB search
MTTETQSRSRSRGGNRRRSGRRRPRGGGRPSGLPQDNFEVDESTLPDLGNLGAKTNDELR
QMAIDKGIKRVPTQRTELVLEVLASVAESTDQLVGAGILDLLGDGYGFLRTPGKRGGTED
IYVSQSQVRRFGLRQGDMVAGQVRPPNEGEKYFGLIRVELVNGYDPESASKRPKFDQFTS
VYPNDQIKLETTPKQMSTRMIDMVAPIGKGQRALIVAPPKAGKTMLLKQIAAGITENHPE
IYIIVSLIGERPEEVTDMRRTIKGEVFSSTFDEPIEDHCRTAEVALDRARRLVESGENVV
VLLDSITRLARAYNLSVPSSGKTLSGGMDPNALYPPKHFFGAARNCEEAGSLTIIATALI
DTGSRLDDLIYEEFKGTGNMELHLDRRMAERRLWPAIDIERSGTRHEELLQDDGTLKQVW
LLRRMMGIIGQDSNSPTEAAERILERMSRTQTNEEFLGSITKPEKV
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
ctgactaccgaaacccaatctcgatcgcgatctcgcggcggcaatcgccgacgatcaggc
cgacgccgacctcgtggcggtggacgccccagcggactaccgcaagataatttcgaggta
gatgagagcacgctacccgatctgggtaacctgggtgctaaaaccaacgacgaactacgg
cagatggccatcgacaagggcatcaagcgagttccaacccagcgaaccgaattggttttg
gaagttctcgcaagcgttgcggaatccaccgaccaacttgtcggagctggcatcctcgac
cttctcggtgacgggtatggcttcctccgcacaccaggcaaacgtggtggcacagaagat
atttacgtatcgcagagccaagttcgacgattcggacttcgccagggcgacatggtggcg
ggtcaggttcgaccaccaaacgagggtgaaaagtacttcggcctgattcgtgtagaactg
gtaaacggctacgaccctgaatcggcatcgaagcgaccgaaattcgaccagttcacttcg
gtttacccgaacgaccagatcaagcttgagacaactcctaaacagatgtctactcgaatg
atcgacatggttgctcctatcggtaaaggtcagcgagcacttatcgttgctccacctaag
gccggtaagacgatgcttctcaagcagattgctgccggtattaccgagaaccatcctgag
atttacatcatcgtttcacttattggtgaacgacctgaagaagtaactgacatgcgccgc
accattaaaggtgaagtattcagttctactttcgatgagccaatcgaagaccactgtcgt
acagcagaggtcgctctcgacagagcgcgccgcctggttgaaagcggcgagaacgtagtt
gtgttgctcgacagcattacccgactcgctcgtgcttacaacctttccgtaccttccagc
ggtaaaacactttctggtggtatggacccgaacgctctttacccaccgaagcacttcttc
ggtgcagctcgaaactgtgaagaagcaggaagcctgacgatcatcgccacagcgctaatc
gacaccggttcacgtttggacgacctcatctacgaagagttcaaaggtaccggcaatatg
gaactgcatctcgaccgcagaatggcagagcgccgactgtggccagcaatcgacatcgaa
cgtagtggaactcgtcacgaagagcttcttcaagacgatggcactctcaagcaggtttgg
ctacttcgccgaatgatgggaattatcgggcaagactcgaacagcccaactgaagcagca
gagcgaattctcgaacggatgtctcgaacccagacgaacgaagagttcctgggatcgatc
acaaaacccgaaaaggtctag
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