KEGG   Candidatus Lucifugimonas marina: GKN94_12505
Entry
GKN94_12505       CDS       T10105                                 
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
lmaj  Candidatus Lucifugimonas marina
Brite
KEGG Orthology (KO) [BR:lmaj00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:lmaj03009]
    GKN94_12505 (rlmD)
Enzymes [BR:lmaj01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     GKN94_12505 (rlmD)
Ribosome biogenesis [BR:lmaj03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    GKN94_12505 (rlmD)
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 MTS Methyltransf_15 Methyltransf_11 PCMT Methyltransf_23 TRM5-TYW2_MTfase AbrB-like RrnaAD
Other DBs
NCBI-ProteinID: WFG36465
LinkDB
Position
complement(2719730..2720995)
AA seq 421 aa
MAKRKRRKRYNGPDLTEHIDLSPGDNFEITLGSINDAGDTVTELDGAPVVVSGGLPGEVV
IAEVQKKFPERIAAKVAQVLKPAIERIEPECKYFLECSGCQWQHVSYGHQLQLKRERVQR
EIDKYESLAGLEVDLTVESEKRLGYRNHGRFTIGKYEDAGQVGYKNAVTRQFVRIEECLL
MDQKVNDTIALVQDKMDGQTQMSIRVGANTDSMLVQPKMEIPGLDLVTGVQHYEEEVRGS
CFTVAASSFFQVNTGQLSRAVDEVRELLDLQGTEVMVDAYCGVGVFAVLMSPYVKKVVGI
EESASAIEDAGQNMNGVTNVEFIEGKTEDVMADWPLVDDVDVLLLDPPRVGCHPDVLDSV
KKLKPKKVLMVSCEPAAMGRDLDLLCQGGMYKLEILRPVDMFPQTRHVETISMLTLQESQ
D
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggcgaaacgcaagcgacgaaaacgttataacggaccggatctgactgagcatatcgat
cttagtccgggcgataattttgagattactctcggctcgataaacgatgctggcgatact
gtgacggaactcgatggagctcctgtcgtggtttcaggcggtctgcccggcgaagttgtg
attgccgaggttcagaaaaagtttcctgagcgaattgccgccaaagtggcgcaggtattg
aagcccgccatagagcgcattgagcctgagtgcaagtatttcctcgagtgcagtgggtgt
cagtggcagcatgtttcgtatgggcaccagttgcagctgaagcgtgaacgagttcagcga
gagattgataagtacgaatctctggctggtttagaagtcgacctgactgtcgagagtgag
aagcgtcttggctatcgcaatcacggccgattcacgattggtaagtacgaggacgcaggt
caggtcggttacaagaatgctgtgactcggcagttcgttcgtattgaagagtgtcttctg
atggatcagaaggtgaacgatacgatcgctcttgttcaagacaagatggacggtcagacg
cagatgtcgattcgagttggagcgaatactgactcgatgttggttcagcccaaaatggaa
ataccgggtcttgatctggtgacaggtgtgcagcactacgaagaagaagttcgtggttcg
tgcttcactgttgcggcatcgtcgttctttcaggtgaatacgggtcagctttcgcgggct
gtggatgaggttcgagagcttcttgaccttcagggcacagaagtaatggtcgacgcctac
tgcggtgttggagtgttcgccgtgttgatgtcgccatatgtgaaaaaggttgttggcata
gaggaatcggcgtcagctatcgaagatgctggtcagaacatgaacggtgtcacgaatgtc
gaattcatcgaaggcaagactgaagatgtgatggcagattggccgttggtagacgacgtt
gacgtgctgctgcttgatccgcctcgagtgggttgccacccggatgtgttggactcagta
aagaagttgaagccgaagaaggttttgatggtttcgtgcgagcctgcggcgatgggtcga
gatctggatttgctgtgtcagggcgggatgtacaagttggaaattcttcggcctgtagat
atgttccctcagactcgtcacgtcgagacaatcagcatgcttactcttcaggaatcgcag
gattag

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