Liquorilactobacillus mali: LM596_01725
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Entry
LM596_01725 CDS
T06815
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lmal
Liquorilactobacillus mali
Pathway
lmal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lmal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LM596_01725 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmal03021
]
LM596_01725 (rpoC)
03400 DNA repair and recombination proteins [BR:
lmal03400
]
LM596_01725 (rpoC)
Enzymes [BR:
lmal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LM596_01725 (rpoC)
Transcription machinery [BR:
lmal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LM596_01725 (rpoC)
DNA repair and recombination proteins [BR:
lmal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LM596_01725 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QFQ73929
LinkDB
All DBs
Position
393277..396945
Genome browser
AA seq
1222 aa
AA seq
DB search
MIDVNKFDSMQIGLASSDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTEPGNTPLEKKQLLTEREFREKREQYGHEFKAGMGAEAIRTLLQ
DVELEKECAELKEELKEATGQKRTRAVRRLDILEAFLQSGNKPSWMVLDAIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPKLKMNQMGIPHE
MALELFKPFMMKELVQREMASNIKNAKRKLDRRDEDIWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVNGKAMRLHPLACEAYNADFDGDQMAIHVPLSAEAQAEARLLMLAAHHIL
APKDGKPIVTPSQDMVIGNYYMTVEEAGREGEGMVFKDVNEARTAYLNNYVHLHTRIGLQ
TVSLAKLGKPFSDWQKERVMVTTVGKAIFNEILPPEFPYLNEPTEENLTGNTPDKFFLEP
GVDIHQYLADHELILPFKAGFLSDIVAEVYKKFKVTETSKLLDRMKDTGYYESTKSGLTV
GISDVTDLKEKPAIIDKAHKEVANVAKQFRRGLITEDERYERVIAIWNDAKDQIQEKLIQ
NMNPKNPIQMMSDSGARGNISNFTQLAGMRGLMAAPNGKTMELPIIANFREGLSVMEMFI
STHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREKDCGTDRGLDVTAIREGNELVEP
LYDRILGRYTMKEVKNPKTGEVIVPANVMMDEELATKIINAGVEMVTIRSAFTCNTRHGV
CEHCYGRNMATGDEVEVGEAVGTVAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQE
IFEARNPKGRAEITEVTGVVEAIEENPAERTKEVTVKGETDTRTYSLPFTSVLKVAEGDK
IHRGDALTVGSIDPKQLIQVRDVLSTENYILREVQKVYRMQGVEISDKHIEVMSRQMLRK
VRVMDPGDTELLPGTLMDIFDFKDQNYKTIIQGGIPATARPVLLGITKASLETNSFLSAA
SFQETTRVLTDAAIRGKNDPLIGLKENVIIGKIIPAGTGMPDYRGIKPKEVGTVSENVYS
ISDLEKKMKEEEAAAQGSTSND
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtcaataaattcgatagtatgcagattggtttggcttcttcagataagatc
cgtagttggtcttatggtgaagtgaagaaaccagaaacaataaactatcgtactcttaaa
ccagaaaaagacggtttgtttgacgaaagaatttttggaccaacaaaagattgggaatgt
gcatgtggtaagtacaaacgtattcgttataaaggaatcgtttgtgatcgttgtggtgtt
gaggttacacgttctaaagttcgtcgtgaacgcatgggacatattgaacttgcagcccca
gttacgcatatttggtattttaagggaattcctagccgcatgggtctagtgcttgatatg
agtccacgtgcacttgaggaagttatttactttgcctcatatgttgttacagaacctgga
aacacaccactggaaaaaaagcagcttttaacagaacgcgagtttcgtgaaaaacgtgaa
caatatgggcatgaattcaaagctggaatgggagcggaagcaattcgtaccttgttacaa
gatgttgaacttgaaaaagaatgtgcagagttaaaagaagaattaaaggaagcaactggg
caaaagagaacacgtgcagttcgtcgccttgatattcttgaagcattcctacaatcaggg
aataaacctagctggatggtactggatgcaattcccgttattccaccagatcttcgccca
atggtacagcttgaaggtggacgatttgcaacttcagacttaaatgatttgtatcgtcgc
gtaattaaccgtaacaatcgtttgaaacgtttgcttgacttgaatgcacctgggattatt
gttcaaaatgaaaaacgtatgttacaagaagctgttgatgcgctgattgacaacgggcgc
cgtggacgtcctgtaactggacctggtaatcgtccattgaagtcattgtcacatatgctt
aaaggtaagcaaggacgtttccgtcaaaacttacttggtaagcgtgttgattattctgga
cgttctgttattgatgttggacctaagctcaaaatgaatcaaatgggaattcctcatgaa
atggcacttgaattgtttaagcctttcatgatgaaagaacttgttcagcgcgagatggct
tctaatatcaagaatgctaaacgaaaacttgatcgccgagatgaagacatttgggatgta
ttggaagatgttattaaggaacatcctgttcttttaaaccgtgcacctacacttcaccgt
ttgggtattcaagcttttgagcctaccctagtgaatgggaaagctatgcgtttgcatcca
ttagcttgcgaggcatacaatgccgattttgatggagatcagatggctattcatgttccg
ctgtccgcagaagcacaagcggaggcacgcttgctgatgcttgctgctcatcatattttg
gctcctaaagatggtaaaccaattgttactccatcacaggatatggttattggtaactat
tacatgacggttgaagaagcaggccgtgaaggtgaaggaatggttttcaaagatgtcaat
gaggcacgtacggcatacttgaataactatgttcatttacacacacgaattggtttgcaa
actgtttctcttgctaaattaggcaagccattcagtgattggcaaaaagaacgagttatg
gtcacaactgttggtaaagcgatctttaatgagattcttccaccggagttcccatacttg
aatgaaccaacggaagaaaaccttacagggaacacacctgataagttctttcttgaaccc
ggcgttgatattcatcaatatcttgctgatcatgaattgattttgccatttaaagcaggt
ttcttgagtgatatcgttgccgaagtttacaagaaatttaaagttactgaaacatctaag
ttgcttgatagaatgaaggatactggatattatgagtctactaagtccggattgaccgtt
ggtatttctgatgttactgacctgaaagaaaaaccagctatcattgacaaggcccataaa
gaagttgcgaatgttgcaaaacagttccgtcgtggtttgattactgaagatgagcgttat
gaaagagtaattgcaatctggaatgatgcaaaagaccagattcaagaaaaacttattcag
aacatgaatcctaaaaacccaattcaaatgatgtcagattctggtgcacgtggtaatatt
tcaaactttacacaacttgctgggatgcgtggcctgatggctgctcctaatggtaagaca
atggaattaccaatcattgcaaacttccgagaaggcttgtctgttatggaaatgttcatt
tctactcatggtgcccgtaaaggtatgactgatacggctcttaagactgctgattctggt
tatcttacacgtcgtttggttgatgttgcacaggatgtaattatccgtgaaaaagattgt
ggaaccgatcgtggacttgatgtaacagcaattcgtgaaggcaatgaattagttgaacca
ttgtatgatcgtattttaggtcgttacacaatgaaggaagttaagaatcctaagacaggt
gaagttattgtaccggcaaatgttatgatggatgaagagttagcaactaagattatcaat
gccggtgttgaaatggttacaattcgttctgcatttacatgtaacactcgtcatggggta
tgtgaacattgttatggtcgtaatatggctactggcgatgaagttgaagttggtgaagca
gtcggaaccgttgctgctcaatcaattggtgaaccaggtactcagcttacgatgcgtact
ttccatactggtggtgttgctggagatgatattacgcaaggacttcctcgtgttcaggaa
atttttgaggcacgtaaccctaaaggtcgtgctgaaattactgaagttacaggtgttgtt
gaggcgattgaagaaaatcctgctgagcgtacaaaggaagttactgttaagggtgaaact
gatacaagaacttacagcctgccgttcacttcagtattaaaagttgctgaaggagacaag
attcatcgtggagatgcattaactgttgggtcgattgatcctaaacaacttattcaggta
cgcgatgtcttatcgactgaaaactatattctaagagaagttcaaaaggtttaccgtatg
caaggtgttgaaatctccgataagcatattgaggttatgtctcgccagatgttacgtaaa
gttagagtgatggatccaggggatacggagctcttgccaggtacattgatggatattttc
gattttaaagaccaaaattataaaaccattatccaaggtggaattccagctactgcaaga
cctgtattgcttgggattacgaaagcttctcttgaaacaaatagtttcttgtcagctgct
tcgttccaggaaactacacgtgtcttaacagatgctgcaattcgtggtaagaatgatcca
ctcattggtttgaaggaaaatgttatcattggtaagattattcccgctggtacaggtatg
cctgactaccgtggaatcaagccaaaagaagttggaactgtttctgagaatgtctattct
atctctgacctagagaagaaaatgaaagaagaagaagctgctgcacaaggctccacttcg
aatgactaa
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