Liquorilactobacillus mali: LM596_02100
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Entry
LM596_02100 CDS
T06815
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lmal
Liquorilactobacillus mali
Brite
KEGG Orthology (KO) [BR:
lmal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lmal03009
]
LM596_02100 (rlmD)
Enzymes [BR:
lmal01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LM596_02100 (rlmD)
Ribosome biogenesis [BR:
lmal03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LM596_02100 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_15
Methyltransf_25
TRM5-TYW2_MTfase
MTS
PrmA
RrnaAD
Methyltransf_11
Methyltransf_23
UPF0020
N6_N4_Mtase
TehB
Methyltransf_32
Methyltransf_12
TPMT
Motif
Other DBs
NCBI-ProteinID:
QFQ74001
LinkDB
All DBs
Position
459138..460514
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AA seq
458 aa
AA seq
DB search
MSKPPVAKNQKLTLTISDLTYQGMGVGKVEHYPLFIENALPDEVVDITVIKVSKNYGFAK
VINRHNDSPLRTAGIDKTYTQTGIAPLQHLKYDAQLSFKRNQVVELLKKSHLEEVEVAPV
LGMDKPIHYRNKAQVPVRMVKNRLETGFFKKNSHNFVPMEDYLIQDERIDEVIKAVRDIL
RKFMISAYDEKTHKGVVRHIIVRRGHYSHEVMVVLVTRAKKIPESDEVVGEILKACPDVR
TVVQNINQEKTNVILGKTEKILAGDGHITDSLNGINFEISAHSFYQVNSVQTEKIYQKVV
EAAELTGKETVIDAYCGIGTISLNLAQKAAKVYGVEIVPEAIDDAKKNATANNIDNAIFE
VGTASDWMAKWSEEGIKPDVVVFDPPRKGLESEVINSTAKLAPAKIVYVSCNPATLVRDI
QLFTEKGYQVAKPIQPVDQFPMTTHIESITVLTRTENN
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaccaccagtagcaaaaaatcaaaaattaacgctgacaatcagcgatttgaca
taccaaggaatgggtgtaggtaaagttgagcattacccattatttattgaaaacgcacta
cccgatgaggttgtggatatcactgttataaaagtaagtaagaattatggttttgcaaaa
gttattaacagacataatgatagtccactcagaacagcaggaattgacaaaacttataca
caaacaggaattgccccattacaacatcttaaatatgatgcacagctcagttttaaacgt
aatcaggttgtggaactattgaagaaatcacatttagaagaagttgaagttgccccagtt
ttggggatggataaaccgatccattatcgtaacaaggcgcaagttcctgtcagaatggtt
aaaaatcggcttgaaaccggattttttaagaaaaatagtcataattttgttccaatggaa
gactacctcattcaagatgaacggattgatgaagtaatcaaagctgtacgcgatattttg
cgtaagttcatgattagtgcgtatgatgagaagacacataagggtgtggtccggcatatt
attgtgcgccgtggacattattcacatgaagtaatggtagtgttagtaacacgggcgaag
aaaattccggaatcagatgaggttgtgggtgaaatattaaaggcttgcccagatgtgcgt
acagttgtgcaaaacatcaatcaggaaaaaacaaatgtgattttaggaaagacagaaaaa
attcttgctggagatggtcacatcactgacagccttaatggtattaattttgagatttcc
gcacattcattctatcaagttaactccgttcagacagagaaaatctatcaaaaagttgtt
gaggccgcagaattaactggcaaagagactgtgattgatgcatattgtggaatcggtacg
atttccttgaatctcgctcaaaaggctgcaaaagtttatggtgttgaaattgttccagaa
gcaattgatgatgctaaaaagaatgcaactgcaaataatattgataatgcaatcttcgaa
gttgggacagcgagtgattggatggctaaatggtctgaagagggcattaaacccgatgtt
gtggtctttgatccacctcgtaaaggtttggaatcagaagttatcaacagtacagcaaaa
ttggccccagcaaagatcgtttatgtgagttgtaatccagctacattggtacgtgatatt
cagttattcacagaaaagggttatcaagtggcaaaaccaattcaacctgttgatcagttc
ccaatgacgacacatattgaatcaataacggttttaacgcgaacagaaaacaattaa
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