Liquorilactobacillus mali: LM596_06440
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Entry
LM596_06440 CDS
T06815
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lmal
Liquorilactobacillus mali
Pathway
lmal02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lmal00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LM596_06440 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmal03021
]
LM596_06440 (rpoD)
Transcription machinery [BR:
lmal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LM596_06440 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
QFQ74770
LinkDB
All DBs
Position
complement(1353477..1354601)
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AA seq
374 aa
AA seq
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MAENVNKGTESAAYTKAVNELIKEYKAQKEINYDDLSEKIVTPYSLDSGQMDELIQKLED
SGISVVDEKGEPSEHSLKAASSVAEKASSEKNVSAPAGVKINDPVRMYLKEIGRVNLLTA
DEEVALALKIEEGNEESKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEK
FDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGREP
VPEEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYE
LLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL
RHPSRSKQLKDFLE
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgtaaataaaggaactgaaagtgcagcatatactaaagccgtgaatgag
ttaattaaagaatataaggcacaaaaagaaattaactatgatgatttgagtgagaaaata
gttactccctatagcttggattcaggtcagatggatgaacttattcagaaacttgaagat
tctggcatttcagttgtagatgaaaaaggtgaaccaagtgagcatagtttaaaagccgct
tcgagcgttgctgaaaaggcatcaagtgaaaagaatgtatcggcacctgctggggttaag
attaatgacccagttagaatgtaccttaaggaaattggacgcgtaaatttgttgacggct
gatgaagaggttgctttagcgttgaagattgaagaaggtaatgaagaatcaaaacaacga
ttggctgaggctaatttacgtttagttgtttcgatcgctaaacgttatgttggtcgtgga
atgtcttttcttgatcttattcaagaaggcaatatgggactaatgaaggctgttgaaaaa
ttcgattatcgcaagggattcaagttctctacttacgcgacatggtggattaggcaggca
atcacgcgtgcaattgcggatcaggctcgtacgattcgtattccggttcatatggttgag
acaattaataagttaatcagaattcaaagacaaatgctacaagaccttggacgtgagcca
gtgccagaagaaattggtgctgaaatggatatgccaacagataaagttcgtgagattttg
aaaattgcgcaagaaccagtgtcgctagaaacgccaattggtgaagaggatgattcgcat
ttgggtgacttcatcgaagaccacgacgctactagtcccgctgatcatgcagcatatgag
ttattgaaggaacagcttgagagcgtacttgatacattaactgatcgtgaggagaatgta
ttgcgtctgcgctttggtttagatgatggtcgtacacgtacccttgaggaagtaggtaag
gtctttggtgttacacgtgaacgtattcgtcaaatcgaagcaaaggcattacgtaagtta
cgccatccttcacgttcaaaacagttaaaagactttttagaataa
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