Listeria marthii: LAX80_001235
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Entry
LAX80_001235 CDS
T07828
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lmar
Listeria marthii
Brite
KEGG Orthology (KO) [BR:
lmar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lmar03016
]
LAX80_001235
Enzymes [BR:
lmar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LAX80_001235
Transfer RNA biogenesis [BR:
lmar03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LAX80_001235
Prokaryotic type
tRNA splicing ligases
LAX80_001235
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UHP10438
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All DBs
Position
253587..254765
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AA seq
392 aa
AA seq
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MLTLKGKYNEAKVFTDNVDDNTIGQIITLCNQSFTKDSKIRIMPDTHGGKGCVIGTTMTI
EDKIVPNLVGVDIGCGLYVVKLKPGKLKMDFDKLDKVIRERVPSGSKTHDRPVDDFNLDG
VIAPINYGWAARSVGTLGGGNHFIEVNQGVDGIYLVIHSGSRVLGKEIAEYHQEVAYKKL
DILRKELKIGAADAKKMGDLEMATQLNDERELVKLDYDLSYLTGLDLKQYLNDMEIAQKF
AARNRYVMAQIILKAMKWDKAVVSAFDCVHNYIDIDNLMLRKGATSAQLGEQIIVPLNMR
DGSILATGKGNADWNYSAPHGAGRMLSRSKAKVQISLESYQAAMKDVWTTSVSKKTIDEA
PKAYKSAKQLLADVGDTMEIQEIIKPLYNFKA
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgctaacattaaaaggaaaatataacgaagcgaaagtttttacagataacgtggatgat
aatacgattgggcaaattattacgctttgcaatcagtcatttacgaaggatagtaagatt
cggataatgcctgacacgcatggcggtaaaggttgcgtgattgggacgacgatgacgatt
gaagataaaattgttccgaacttggtcggggtggatattggttgtggtttatatgtagta
aagttgaaaccgggcaaattgaaaatggattttgataagttggataaggtcattcgcgaa
cgagttccttcggggagtaagacgcacgatcggcctgttgatgattttaatttagatggt
gtgattgcgccgattaactatggttgggcagcgcggagtgtggggacgcttggcggtggg
aaccattttattgaggtgaaccaaggtgtggacgggatttatcttgtgatccatagcggg
agtcgagtgctggggaaggaaatcgcggagtatcatcaagaagtagcgtataaaaaacta
gatatattacgcaaagaattaaaaatcggcgcggctgatgcgaaaaaaatgggcgattta
gaaatggctacccaattaaacgatgagcgagaactagtgaagctggattacgatttgtct
tacctaacgggcttggatttaaaacaatatttaaatgatatggaaattgctcaaaaattt
gcagcgcgcaatcgttacgttatggctcaaataattttgaaagcaatgaagtgggataag
gcggtcgtttcggcgtttgattgcgtgcataattatatcgatatagataatcttatgctt
agaaaaggtgcgacgtctgcgcaacttggagaacaaatcatcgtcccgcttaatatgcgt
gatggtagtattcttgcaactggtaaagggaatgctgattggaattactcggcgccgcac
ggggcgggaagaatgctaagtcgttccaaagcaaaagtgcaaatcagtttggaaagttat
caagcggcaatgaaagacgtttggactacttcggtttcgaaaaaaacaattgatgaagcg
ccaaaagcctacaaatcagccaaacaactgcttgctgatgtaggggatacgatggaaatt
caagagataattaaacctttatacaatttcaaagcataa
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