Listeria marthii: LAX80_011820
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Entry
LAX80_011820 CDS
T07828
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lmar
Listeria marthii
Pathway
lmar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAX80_011820 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmar03019
]
LAX80_011820 (rnr)
03016 Transfer RNA biogenesis [BR:
lmar03016
]
LAX80_011820 (rnr)
Enzymes [BR:
lmar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LAX80_011820 (rnr)
Messenger RNA biogenesis [BR:
lmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LAX80_011820 (rnr)
Transfer RNA biogenesis [BR:
lmar03016
]
Prokaryotic type
tRNA degradation factors
LAX80_011820 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
RNase_II_C_S1
OB_cyt-4
OB_RNR_1st
HalOD1
S1_RRP5
SH3_VIII-1_N
Motif
Other DBs
NCBI-ProteinID:
UHP09824
LinkDB
All DBs
Position
complement(2356879..2359260)
Genome browser
AA seq
793 aa
AA seq
DB search
MEQKQMEEKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRK
NRYALPEKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRK
GDNLAEGTIKKIVERKTTQIVGTYMEDLAGIPIVMPDDKRLFGEVEIDLEDGLKPVDGHK
VIVELTEYATGNTRARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDV
VDSSDIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSP
LDIEAQERGTSVYLVDRVIPMLPHKLSNGICSLNPKVDRFTMSCEMEIDEDGHVVNHEIF
ESIIKTTERMTYTDVNDILVENDEALCEKYAPIVPMLEAMQNLAETLRRKREKRGAIDFD
FKEARVVVDEDGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK
EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD
TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEH
SSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSA
MKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREIDFALRSEGKPGPVSDK
QKRQREKPMDKTRNFKSGSKNNRNKRRTGKSEDVKPKTERKEDEWYTKPKKKKKKKPFYQ
GVAKESPKKKKRR
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
gtggaacaaaaacaaatggaagaaaaaattatgaatctattaacttcagcgccggataaa
acatttgcgctagaagatttagaaatagagatagctttaaataacgcggatgattttaaa
ttaatggtgaaagctttagtaaaactggaagattccggaactattgtccgctcaaggaag
aatcggtatgcattaccagaaaaaatggacttagtaaaaggaacatttcgcgcacatgaa
cgaggttttggctttgttctcccagaagagaaagaaatggacgatatttttatcccgcca
aatgaagtaaaggatgcaatgaacggtgacttagtttttgcaacaattacgaaacgtaaa
ggcgataatttggcagagggtacgattaagaaaattgtcgaacggaagacaacgcaaatt
gttggaacttatatggaagatttagcaggtattccgatagttatgccagatgataaacgt
ctttttggtgaagtagaaatcgatttagaagatggcctaaagccggtagacgggcataag
gttatcgttgaattaacggaatatgcaacggggaatactcgtgctcgaggtgttgttaag
tcaattattgggcaccgcaatgacccgggagtggatattttatcgattattcataagcat
ggtatttcgattggtttcccagaagaagtaatggagcaagtaagtaaagcaccagatgtg
gttgatagttcggatattgggaatcgccgtgatttgcgcgaccaaatgattattacgatt
gacggggctgatgccaaagatttagatgatgctgttacggtgaaacaacttccgaatggc
aactggaaactgggtgttcatattgcggatgtaacgcattatgtgacagaaggctcgcca
cttgatatcgaagcgcaagagcgtggaacgagtgtttatttggttgaccgggtaattccg
atgttgccgcataaactatcgaatggtatttgttcgcttaatccaaaagtagaccgtttt
acaatgagttgtgaaatggaaattgatgaagatggtcatgttgttaatcatgaaattttt
gagagcattattaaaacaacggaacggatgacttatacagacgtaaatgatattttagtt
gaaaatgacgaagctttatgtgaaaaatatgcgccgattgttccgatgcttgaagcaatg
caaaatttagcagaaacgcttcgccgtaaacgtgaaaaacgtggcgcgattgattttgat
tttaaagaagctcgtgtggtggttgatgaagacgggcatccagaagcggtcgttatgcgc
gaacgttcagcgggagagcatttaattgaagaatttatgcttgctgcgaatgaaactgtt
gcagaacatttccactggatggatgtaccatttatctatcgtatccatgaagatccaaaa
gaagacaagttagcgcggttctttgaatttattaccaattttggtttgattgtcaaaggg
actgctaatgatattcacccagcggctttacaacaagtactagaagaagtaaaaggtaag
cccgaagagatggttgtttcgacggttatgcttcgttcgatgcaacaagcgaagtacgat
acagtgagcgccggacactttggcttgtccactgatttttatacacattttacttcacca
attcgtcgttacccggatttaatcgttcataggctgattagagagtatttaatcaacggg
gatgttcgtccggaaacgctagaaaaacgtgctgaggagctgcctgagattgctgaacat
agctcgaaaatggagcgtcgtgctgtagaagcagaacgcgaaacggacgaactgaagaaa
acagaattcatggtcgacaaagtgggcgaacgtttcatcggaatcattagttctgtaacc
aattttggtttatttatcgaactgccgacaacgattgaaggtttagtccatgtgagcgca
atgaaaggcgattacttcaaattccatcaaaatcagttagcgatgattggcgaaagaaca
ggccaaatttatcgtatcggtgatgaagtggaagtagaagtaacgaaagtcgatgtggat
gcgcgtgaaattgattttgcgcttcgtagtgaaggtaaaccaggtccagtgagcgataaa
caaaaacgccaacgtgaaaaaccgatggataaaacgagaaacttcaagagtggctcaaaa
aataatcgtaataagcgcagaactggtaaatcagaagacgtgaaaccaaaaacagaacgc
aaagaagacgaatggtatacaaaacctaaaaagaaaaagaagaaaaagcctttttatcaa
ggtgtagcaaaagaaagcccgaagaagaaaaaacgtcgctag
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