KEGG   Leishmania martiniquensis: 92513652
Entry
92513652          CDS       T10333                                 
Symbol
LSCM1_03605
Name
(RefSeq) hypothetical protein
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
lmat  Leishmania martiniquensis
Pathway
lmat03040  Spliceosome
lmat04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:lmat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    92513652 (LSCM1_03605)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    92513652 (LSCM1_03605)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lmat03041]
    92513652 (LSCM1_03605)
   04121 Ubiquitin system [BR:lmat04121]
    92513652 (LSCM1_03605)
   03400 DNA repair and recombination proteins [BR:lmat03400]
    92513652 (LSCM1_03605)
Enzymes [BR:lmat01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     92513652 (LSCM1_03605)
Spliceosome [BR:lmat03041]
 Complex B
  Other components
   Prp19 complex
    92513652 (LSCM1_03605)
 Complex C
   Prp19-CDC5 complex
    92513652 (LSCM1_03605)
Ubiquitin system [BR:lmat04121]
 Ubiquitin ligases (E3)
  U-box type E3
   92513652 (LSCM1_03605)
DNA repair and recombination proteins [BR:lmat03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    92513652 (LSCM1_03605)
SSDB
Motif
Pfam: WD40_Prp19 Prp19 Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_EML_2 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_WDR36-Utp21_1st WD40_WDHD1_1st Beta-prop_NOL10_N Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_EIPR1 Beta-prop_WDR3_2nd WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd WD40_RFWD3 DSE1_N Beta-prop_VPS8 zf-Nse EIF3I U-box Beta-prop_TEP1_C Beta-prop_SPT8
Other DBs
NCBI-GeneID: 92513652
NCBI-ProteinID: XP_067177750
UniProt: A0A836H0T8
LinkDB
Position
27:<1104378..>1105922
AA seq 514 aa
MLRCNISQRVPTHPVVSVKSGLVFERSLVEKYVDEHGRCPVTGDPLCREDLITAQGAVPD
ASVAASGSLGAASVPTLLGRLQVEWEGVALEQFSLRQQVTQLQLELAHALQQYDAACRVI
ARLGKELDALRGGQAMASEEADEGAAAVVVPAAVLRRMDTAEAAERQACKQRKAAAAGSV
ATAPSQLTEEAQWVAATSFSATAPSARSAVRVAAAADDSSAGIFVSAATGDHAIVRYSPV
SFREEARGVGHTAAVHTLASQPGGILLSAAEDQTVRVWSTKAAALTVMHTLRYASGVSAM
SRRTVGGAYVLCGAADGVLTLSDLESGTHVVATAPLTCDAASRALMCVELHPYASLAAVA
LQPTELQLWDTREMRADTVISNLHGTASRAHIGSVSFNADCVSLAAGLTDGSTYVWDLRQ
VQAPIAVLPPSTDVIPATVRYAPNGLSLVVGGHGVNLYDCARLPASRASVEATATAALKT
GAVCDMCWTANSEGLLCGSVDGTVRLYSTVSSSE
NT seq 1545 nt   +upstreamnt  +downstreamnt
atgctgcgctgcaacatctctcagcgggtgccgacgcacccggtggtgtctgtcaagtcg
gggctcgtctttgagcgcagccttgtcgaaaagtacgttgacgagcatggccgctgcccc
gttacaggggacccactgtgcagggaggacctcataaccgcccagggcgctgttccggac
gcgtccgttgcggccagtggcagcctcggggccgcttctgttcctacgcttctggggcgc
ctccaggtggaatgggagggggtggcgctggagcagttcagcctccggcaacaggtaacg
cagctgcagttggagctggcgcacgcattacagcagtacgacgccgcctgcagggtgatc
gcgcgactcggcaaggagctcgacgccctccgaggaggccaagcgatggcctccgaggag
gccgatgagggcgctgctgcggtggtggtgccggcggcggtgctgcggcgcatggatact
gctgaggcggcagagcgccaggcgtgcaagcagcgcaaggcggcggcggccggctcggtg
gcgaccgcaccgtcgcagctgacggaggaggcgcagtgggtggccgccacgtcgttttca
gccactgcaccgtctgcgcgctcggcggtgcgtgtggcggcggcggcggacgacagcagt
gcgggcatcttcgttagtgctgccacgggcgatcacgcaattgtgcggtacagccctgtc
agcttccgtgaggaggcgcgcggtgtagggcacaccgccgcggtgcacacgctggcgagt
cagccgggcggcatcctgctgtccgccgctgaggatcagacggtgcgcgtgtggtcgacc
aaggccgctgcgctgacggtcatgcacacgctgcggtatgcgagcggagtatctgcgatg
agtcggcggaccgtgggtggggcgtatgtgctctgcggcgccgctgatggcgtcctcacc
ctctccgacctggagagcggcacgcacgttgtggcgacggcgccgctgacatgcgatgca
gcgtcgcgggcgctgatgtgcgtggagcttcatccatacgcctcgctggcagccgtggct
ttgcagccgacggagctgcagctctgggatacgcgtgagatgcgcgccgacaccgtcatc
tccaacttgcacggcactgcctcgcgcgcgcacatcggtagcgtcagcttcaatgccgac
tgcgtatccctcgcggctggcctcacggatggctcgacgtacgtgtgggacctccgccag
gtgcaggcccctatagcagtgctgccgcccagcactgacgttatcccagccacggtgcgc
tacgctccaaacggactctctctcgtcgttggaggacacggggtgaacttgtacgactgt
gcacgcctgccggcctcgcgcgcctcggtggaggctacagcgacggccgcactgaagacg
ggtgccgtgtgcgacatgtgctggacggcgaacagcgagggcttgctgtgcggctccgtg
gatggcaccgtccgcctgtattccactgtatccagcagcgagtag

DBGET integrated database retrieval system