Leishmania martiniquensis: 92513688
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Entry
92513688 CDS
T10333
Symbol
LSCM1_03642
Name
(RefSeq) hypothetical protein
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
lmat Leishmania martiniquensis
Pathway
lmat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
92513688 (LSCM1_03642)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmat03019
]
92513688 (LSCM1_03642)
Enzymes [BR:
lmat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
92513688 (LSCM1_03642)
Messenger RNA biogenesis [BR:
lmat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
92513688 (LSCM1_03642)
mRNA degradation factors
3'-5' decay
Pan complex
92513688 (LSCM1_03642)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
UCH_1
Beta-prop_EML_2
UCH
Motif
Other DBs
NCBI-GeneID:
92513688
NCBI-ProteinID:
XP_067176544
UniProt:
A0A836GEV0
LinkDB
All DBs
Position
30:complement(74206..77592)
Genome browser
AA seq
1128 aa
AA seq
DB search
MSLSSQGSAPWKFRGDATASVGAITAVEFDPDVELLWVCDAFGMLMSFSLQSQGQGEASA
WVNYSSFSVCSRPAASIFFLNMGGERMVTVADREVIRGYKRGGVLMMCLPQPTAVQNYID
LFQANNNTGAMFYTGNAGLTRLILNNEETDQLTVPVEATVVALKQCDRWVATGSASGAVC
VRSASDLSVVGQAALSRNRVMALEVFDNTVMAAYSERSATSFVKVFDVRKMSEAVSTIQD
IPSGNVTQMRRYQDGFGLSSDRAFLLSPGGFHIIQLDQEKPVFSSSPLSEGSCTAVAVSP
SNMCAAIGNDKGTFYALAHPATRDDYVMSTFVQPVRPKHPVYHHSWEEPNIADGFDDSAD
LGTLASNWPEEHYMILTVPQKLRCVNYESHSIVPNEWGLMRADSCLPDPKDKLSSLLPNP
YPFNTQLGDDPACAQETLLELRKDMKRKHKSTRGVGGGEYSPMEDSLQVCYSVQHKLDWR
SYNEIAQRVVGIDNSFPECWITPLLQSLYLCQPPEFPIRKVILRHICKREFCMTCEIAFV
FANMLTTSASVLGMKGEALPPIVPVAHLIRTMRQIRAFTNTGVFQRPKNRDDAVAKMHLA
QRLVLETLHRDLQDQKAYPFLNYESPPEYEGAIAALFGTEFTSNGRVHIEPRFYWEVPGS
ALKVDEGLQHLLKQLEGYKDQVQIKRLPPIIVLLLNPEHSNLKPPTSLKISRAGKEDYNY
VLNSNIVHLADDVEDTGNFVSQQRIKDDSFSLVNDYRVTAPMKMQELERLVPALRSYSAV
ITFYALDNLTTPPYARLDDTRAPNLWHLLGPLLTNDVLSRPLLRDPAKQAFKSPLSSYTD
IKAGDLVAIDAEYVVLKWASRDEGNDMFYVSQRKPHMGLARVSCILSSEDGDERTIMDDY
VHVPEEIEDYVTQYSGIHPGDLDPLESSKSLTSLKSTYLKLRALVDGGVVFVGHGLAQDF
RVCNITVPRKQIIDTLEIFHKPGSRYLSLRFLAYHVLGESVQEDEHDSIEDARTSLRLYR
KYQQLKSEGAFESVLDHLMAKGAETSWYVPDTKSLFRDTPQTPPVSVMGSPVLEKMVNTV
AEDDKDEDAFDMAAAAAATEGDEDDEDGDSDAPTASEVLEAVRKSMER
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcagctcgcaaggaagcgcaccgtggaagttccgcggcgacgccacggcatcc
gtcggggccatcacagcggtggagttcgaccccgatgtggagctgctttgggtctgcgac
gccttcggcatgctcatgagcttctccctgcagtcgcagggccagggagaagcctcggca
tgggtgaactactcctctttttccgtttgcagccgccccgccgcgagcattttcttcctc
aacatgggtggcgagcggatggtgacggtggcggaccgggaggtgatccgtgggtacaag
cgcggtggggtgctaatgatgtgcctgccgcagccgaccgccgtgcagaactacattgac
ctcttccaggcgaacaacaacaccggcgcgatgttctacactggcaacgccggcctgacg
cggctgattctcaacaacgaggagacggaccagctaaccgttccggtagaggcgacggtg
gtggcgctgaagcagtgcgacaggtgggtggccaccgggagcgcctctggcgccgtgtgc
gtgcgcagcgcgtcggaccttagcgtagtcggtcaggctgccctgtcgcgaaaccgcgtc
atggcactggaggtcttcgacaacaccgtgatggcggcctactcggagcgctctgcgacg
tcctttgtgaaggtgttcgatgtacgaaagatgtcggaggcggtgtcaacgattcaggac
atcccgtctgggaatgtgacgcagatgcgccgctaccaggacggcttcgggctatcgagc
gaccgcgcctttctgctgtcgcccggcggcttccacattatccagctggaccaggagaag
ccggtgttctcgtcaagtccactgagcgaaggcagctgcaccgccgtggctgtctcccca
tccaacatgtgcgccgccatcggcaacgacaagggcaccttctacgccctcgcccatccc
gccacgcgagacgactacgtcatgtccacgtttgtccagccagtgcgaccgaagcaccca
gtctaccaccacagctgggaggagccgaacatcgcggatggcttcgacgactcggccgac
ctcggcaccctcgcctcgaactggcctgaggagcattacatgatcctcaccgtgccgcag
aagctgcggtgcgtcaactacgagtcgcacagtattgtgccgaacgagtgggggctgatg
cgggcagatagctgcctgccagacccaaaggataagctcagctccctcttgccaaaccca
taccccttcaacacgcagctcggcgacgacccggcatgtgcacaggaaacgctgctcgag
ctgcgcaaggatatgaagcgcaagcataagtccacgcgtggtgttggcggcggcgagtac
agccccatggaggactccctgcaggtgtgctacagcgtgcagcacaagctggactggcgc
agctacaacgagatcgcgcagcgggttgtgggcatcgacaacagctttcctgagtgctgg
atcacgccgctcctgcagtcgctctatttgtgtcagccacccgagttccccattcgcaag
gtcatcctgcggcacatctgcaagcgcgagttctgcatgacatgcgagatagcctttgtc
tttgccaacatgctgacgacgtcggcgagcgtgctggggatgaagggtgaggcgctgccg
ccgattgtaccggtggcacacttgattcggacgatgcgacagattcgcgccttcaccaac
accggcgtgttccagcggcccaagaaccgcgatgacgcggtagcgaagatgcacttggcg
cagcgactcgtgctggagacgttgcacagggatctgcaggaccagaaggcctaccccttc
cttaactacgagtcaccgcctgagtacgagggcgccatcgctgccctctttggcaccgag
ttcacgtcgaacggccgcgtgcacatcgagccgcgcttttattgggaggtgccaggctcc
gcgctgaaggtggatgagggcctgcagcacctgctgaagcagctggaggggtacaaggat
caggtacagatcaagcggctgccgcccatcattgttctgctgctgaacccggagcacagc
aacctgaaaccgccaacaagcctcaagatatcgcgcgcgggcaaggaggactacaactat
gtgctgaacagcaatattgtacaccttgccgatgatgtggaggacacaggaaacttcgtc
agccagcagcgcatcaaggatgacagcttttcactcgtgaacgactaccgcgtgacggcg
ccgatgaagatgcaagagctggagcgcctggtgcctgccttgcgctcctactcggctgtc
ataaccttctacgctctggacaacctcaccacgccgccgtacgcccgcctggacgacact
cgcgcgccgaacctgtggcacttgcttggccccttgctcacaaacgatgtgctgtcgcgt
ccgctgctgcgggatccggcgaagcaggccttcaaatcgcccttgtcctcgtacacagat
atcaaggctggtgatctcgtcgctatcgacgctgagtatgtagtcctaaagtgggcaagc
cgcgacgaggggaatgacatgttctacgtgtcgcagcgcaagccgcacatgggccttgcc
cgtgtgagctgcattctgagcagcgaggacggcgatgagcgcacgatcatggacgattac
gtgcacgtcccggaggagatcgaggactacgtgacgcagtacagcggcatccaccccggt
gacctcgacccgctcgagtcgtccaagagcctgacgtcgctcaagtcgacgtacctgaag
ctgcgcgcgttggttgacggcggtgttgtctttgtcggccacggcctcgcacaggacttt
cgcgtctgcaacatcaccgtgccgcgcaagcagattatcgacacgcttgagatcttccac
aagccgggctcccgttacctctcgctgcgcttcctggcataccacgtgcttggtgagagc
gtgcaggaggacgagcatgactccatcgaagatgcccgcacgtcgctgcgtctttaccgc
aagtaccagcagctcaagagcgagggcgccttcgaaagcgtgttggaccatctcatggca
aagggtgctgagacgagttggtacgtgcccgatacgaagtcgttgtttcgtgacaccccg
cagactcccccggtgtccgtgatgggctcgcccgtacttgagaagatggtgaacaccgtc
gcggaggatgacaaggacgaggacgcatttgacatggctgctgctgctgctgcgaccgaa
ggcgacgaggacgacgaggatggtgacagcgacgcccccactgccagcgaagtgctggag
gcggtgcgcaagtccatggagcggtag
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integrated database retrieval system
