KEGG   Leishmania martiniquensis: 92514765
Entry
92514765          CDS       T10333                                 
Symbol
LSCM1_04760
Name
(RefSeq) hypothetical protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
lmat  Leishmania martiniquensis
Pathway
lmat03013  Nucleocytoplasmic transport
lmat03015  mRNA surveillance pathway
lmat03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lmat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    92514765 (LSCM1_04760)
  09122 Translation
   03013 Nucleocytoplasmic transport
    92514765 (LSCM1_04760)
   03015 mRNA surveillance pathway
    92514765 (LSCM1_04760)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lmat03019]
    92514765 (LSCM1_04760)
   03041 Spliceosome [BR:lmat03041]
    92514765 (LSCM1_04760)
Enzymes [BR:lmat01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     92514765 (LSCM1_04760)
Messenger RNA biogenesis [BR:lmat03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     92514765 (LSCM1_04760)
Spliceosome [BR:lmat03041]
 Complex C
  Other components
   EJC/TREX
    92514765 (LSCM1_04760)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    92514765 (LSCM1_04760)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII P-loop_SecA Cas3-like_C_2 CMS1
Other DBs
NCBI-GeneID: 92514765
NCBI-ProteinID: XP_067179050
UniProt: A0A836KQZ1
LinkDB
Position
21:complement(<624901..>626421)
AA seq 506 aa
MCGGTHPFPPLPPRCSRVSTPTTERELPQQETENRNISFPRLIPHLHLTPSPPYPPTHPT
FPHLCPLHGVIMSSDLADFDGDDVRTTVVAAQPIGVGMGTHSAVALGGFQDFCLKSELAN
AIRENGFEHPSEVQHQALPKAMLGADILAQAKSGMGKTAVFVFALLEQVEKVPQGQKPYC
QAVVLVHARELAYQIEQEFKRFSKYLPYATTGVFFGGIPEDENVKQLKKEVPAIIVGTPG
RMKALIQNKAFDTTHVKWFVVDEFDRCLEDIKMRRDVQEIFMKLPKEKQVMMFSATMTDD
LRDVAKKFMKDATEIYVDQRAKLTLHGLAQFYMNVTEMEKTRRLAEILDIVEFNQAIIFT
SSVERCEALNRQLQQMKFPSQAVHSRMNQEERLRVYESCKVNNTRIMVATDLFGRGVDFD
RINLVVQYDMASEADSYLHRVGRAGRFGTKGLTIAFITTDEKEIKRENRTYTDGGIMKEV
QERFEMKVEELTDIHTQLNENQYMNK
NT seq 1521 nt   +upstreamnt  +downstreamnt
atgtgtgggggtacacacccatttccccccctccccccgcggtgctctcgcgtatcgaca
ccgacaactgagagagaactgcctcagcaagaaacagagaaccgcaacatatcatttccg
cgcctcatccctcacctccacctcactccatctcccccttacccccccacccacccaact
ttcccacacttgtgtcctcttcacggagtgataatgagcagcgatcttgcggactttgac
ggcgatgatgtcaggaccacggttgtggctgcgcagccaatcggcgtcggtatgggcacc
cacagcgccgttgcgctcggtggcttccaggacttctgcctgaagagtgagctcgccaac
gccatccgcgagaacggcttcgagcacccgtcggaggtgcagcaccaggcgctgcccaag
gcgatgcttggcgctgatattctcgcccaggccaagtcagggatgggcaagacggccgtg
ttcgtctttgcgctgctggagcaggtggagaaggtgccgcaggggcagaagccgtactgc
caggccgtcgtgctcgtgcacgcccgtgagctggcgtaccagattgagcaagagtttaag
cgcttcagcaagtacctcccctacgccaccaccggcgtcttctttggcggcatcccggaa
gacgagaacgtgaagcagctaaagaaggaggtcccggcgatcatcgtcggcacgccgggc
cgcatgaaggcgctcattcagaacaaggccttcgacacaacgcacgtgaagtggtttgtc
gtcgacgagttcgaccgctgcctagaggacatcaagatgcgccgtgatgtgcaggagatc
ttcatgaagttgccaaaggagaagcaggtgatgatgttctccgccacaatgacagatgat
ctgcgcgatgtcgcgaagaagttcatgaaggatgcgacggagatttacgtggatcagcgc
gcaaagctgaccttgcacggcctggcgcagttctacatgaatgtgacggagatggagaag
acgcgccggctggcggaaatcctggacatcgtggagttcaaccaggcgatcatcttcacg
tcctcggtggagcgctgtgaggcgctcaaccgccagctgcagcagatgaagttcccgtcg
caggctgtacactcccgcatgaaccaggaggagcgcctgcgcgtgtacgagagctgcaag
gtgaacaacacccgcatcatggtcgccaccgacctcttcggccgcggcgttgactttgac
cgcatcaacctcgtcgtgcagtacgacatggcctccgaggccgacagttaccttcaccgg
gtcggccgtgctggccgctttggcacgaaggggctgacgatcgccttcatcacgacagat
gagaaggagatcaaacgcgagaatcgcacgtacacggatggcggcatcatgaaggaagtg
caggagcgctttgaaatgaaagtggaggagctgacagacattcacacacagctcaacgag
aaccaatacatgaacaagtaa

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