Marilutibacter maris: C9I47_1067
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Entry
C9I47_1067 CDS
T05495
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lmb
Marilutibacter maris
Pathway
lmb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C9I47_1067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmb03019
]
C9I47_1067
Enzymes [BR:
lmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C9I47_1067
Messenger RNA biogenesis [BR:
lmb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C9I47_1067
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
UTP25_NTPase-like
AAA_22
Cas3-like_C_2
P-loop_SecA
HEM4
DUF2529
Shikimate_DH
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
AWV06784
UniProt:
A0A2U9T748
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All DBs
Position
1334515..1335834
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AA seq
439 aa
AA seq
DB search
MSFESLGLAPALLRALSEQGYTSPTPIQAEAIPLILDGHDLLGGAQTGTGKTAAFSLPLL
NRLSKQTPARGPRKPRVLVLVPTRELAVQVHDNLRGYGRHLQVASCTIFGGVGMGPQVDA
LRRGVDVLIATPGRLIDHMERGSARLDGIEVLVMDEADRMLDMGFLPAIKRILGKLPRER
QTLLFSATFETQLKALALEFMRDPKQVQVAANNTIAETIAHRAHPVDAERKRDLLIDILA
ERHTDQVIVFGRTKHGCNRLAEQLEKSGIRAVAIHGNKSQAQRQKALNAFKAAKARVLVA
TDVAARGLDIPNLPLVINFDLPMVAEDYVHRIGRTGRNGAQGEALSLVSHDEGGLLRQIQ
RVLKKDVELADFPGYAPSQPLRLDVPLPNPRSKRGGGGARKPAHRPHAKPAPRHAHAGPK
PGRGERSGRNRRRSGQGSA
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatccctcgggctcgcgcccgcgttgctgcgcgcgttgtccgaacagggc
tatacctcgccgacgccgatccaggccgaagcgatcccgctgatcctggacggccacgac
ctgctcggcggcgcccagaccggcaccggcaagaccgcggctttcagcctgccgctgctg
aaccgcctgtccaagcagaccccggcgcgcggcccgcgcaagccgcgcgtgctggtgctg
gtcccgacccgcgagttggccgtgcaggtgcacgacaatctgcgcggctatggccgtcat
ctgcaggtcgcgagctgcacgatcttcggcggcgtcggcatgggcccgcaggtcgacgcg
ctgcgtcgaggcgtcgacgtgctgatcgccacccccggccgtctgatcgaccacatggag
cgcggcagtgcgcgtctggacggcatcgaggtgctggtgatggacgaggccgaccgcatg
ctcgacatgggcttcctgccggcgatcaagcgcatcctcggcaagttgccgcgcgagcgt
cagaccctgctgttctcggccaccttcgagacccagctgaaggcgctggcgctggagttc
atgcgcgatcccaagcaggtgcaggtggcggccaacaacaccatcgccgagaccatcgcc
caccgggcccacccggtcgacgccgagcgcaagcgcgacctgctgatcgacatcctggcc
gagcgccacaccgaccaggtgatcgtgttcggccgcaccaagcacggctgcaaccggctg
gcggaacagctggagaagtccggcatccgcgcggtcgcgatccacggcaacaagagccag
gcgcagcggcagaaggcactcaacgcgttcaaggcggccaaggcgcgggtgctggtcgcc
accgatgtcgccgcgcgcggcctggacatcccgaacctgccgctggtgatcaatttcgat
ctgccgatggtggccgaggactacgtgcaccggatcggccgtaccggccgcaacggcgcg
cagggcgaggcgctgtcgctggtttcgcacgacgagggcggactgctgcggcagatccag
cgggtgctgaagaaggacgtcgagctggcggacttccccggttacgcgccgagccagccg
ctgcggctggatgtcccgctgccgaacccgcgcagcaagcgcggcggcggtggcgcgcgc
aagccggcccatcgcccccatgccaagccggcgccgcggcatgcccatgccggaccgaag
ccggggcgtggcgaacgcagcggccgcaaccgccgccgcagcggtcagggctccgcctga
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