Marilutibacter maris: C9I47_1195
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Entry
C9I47_1195 CDS
T05495
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lmb
Marilutibacter maris
Pathway
lmb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lmb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C9I47_1195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmb03400
]
C9I47_1195
Enzymes [BR:
lmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C9I47_1195
DNA repair and recombination proteins [BR:
lmb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C9I47_1195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AWV06910
UniProt:
A0A2U9TF82
LinkDB
All DBs
Position
complement(1496004..1499552)
Genome browser
AA seq
1182 aa
AA seq
DB search
MTRSKSAPTLPPSPPLPRSGQPRAWWRAPASASALAWHVLQAARTHDGPLLAITRDNHAA
HQLEADLRTLVGSGAGSGADGGDDATTLPVLAFPDWETLPYDVFSPHPDIVSQRLAVLHR
LPDLSRASIVIVPVQTLLQRLAPKRHVIGSSFDIAVGQRLDLDAEKRRLESAGYRHVPQV
LDPGDFAVRGGLLDVFPMGAEQPFRVELLDDEIDTIRGFDPESQRSLEKIDAVRMLPGRE
LPLDEASIKEVLDALRERFDLDTRNSALYQDLKAGVAPGGIEYYLPLFFEKPGSARREAA
EATATLFDYLGERALPVLGDGIHEAADAFWKQTGERYEQRRHDIERPVLTPAELYLSPDA
MRERLNKAPRIEVCGESHPQRERAQALGEQPAPSLPVAARDHAPGEALTSFLSSYPGRVL
IAADSPGRREALLEVLEPAQLRPATLPGWRDFLDGDARFAIAVAPLEDGFALDAPQIAVL
TERQLFPERASQPRRRRRVGREPETIIRDLGELREGAPIVHEDHGVGRYRGLIVLEAGGE
PGEYLEIEYAKGDRLYVPVAQLHLINRYSGASEETAPLHSLGGEQWSKAKRKAAEKVRDV
AAELLEIQAKRQARAGLAIDVDRAMYEPFAATFPFEETPDQHAAIEAVIRDLQSSQPMDR
VVCGDVGFGKTEVAVRAAFVAASGGRQVALLVPTTLLAEQHYRNFRDRFADWPLRVEVLS
RFKSSKEIKAELDKLAEGQLDVIVGTHRLLQKDVRFKDLGLVIVDEEQRFGVRQKEALKA
LRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPAHRLAVQTFVVPWDDAQLREAFQR
ELSRGGQVYFLHNDVESIGRMQRQLQELVPEARIGIAHGQMPERELEKVMLDFHKQRFNV
LLCSTIIESGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHRAYAYLVTPDRRSITP
DAQKRLDAIASMDELGAGFTLATHDLEIRGAGELLGEDQSGQMAEVGFSLYTELLERAVR
SIRQGKLPDADETEARGAEVELHIPALIPDDYLPDVHTRLTLYKRISGARDKDALREMQV
EMIDRFGLLPDPAKHLFAVAELKLDATALGIRKLDLGENGGRVQFVEKPNVDPMAIIKLI
QGQPKLYRMDGPDKLRVTLELPDAIARLAAAKGLLVMLSKGG
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgacccgatccaagtccgccccgacccttccgccctcccctccactgccccgcagcggc
cagccgcgcgcctggtggcgcgcgccggcctcggcctcggcgctggcctggcatgtgctg
caggccgcgcggacgcatgacgggccgttgctggcgatcacccgcgacaaccacgccgcc
caccagctggaagccgatctgcgcaccctggttggcagtggtgctggcagtggtgctgac
gggggcgatgacgcgacgacgctgccggtgctcgcgttcccggactgggagaccctgccc
tacgacgtcttcagcccgcatccggacatcgtcagccagcgcctggcggtgctgcaccgc
ctgccggacctgagccgcgccagcatcgtgatcgtgccggtgcagaccctgttgcaacgg
ttggcgcccaagcgacacgtgatcggatccagcttcgacatcgcggtcggccagcgcctg
gacctggatgccgagaagaggaggctggagtcggccggctaccgccatgtcccgcaggtg
ctcgacccgggcgacttcgcggtccgtggcggcctgctcgacgtgttcccgatgggcgcc
gagcaaccgttccgggtcgaactgctggacgacgagatcgacaccatccgcggcttcgac
cccgagtcgcagcgctcgctggagaagatcgacgcggtgcgcatgctgcccggtcgcgag
ctgccgctggacgaggcctcgatcaaggaggtgctcgacgcgctgcgcgaacgcttcgac
ctggatacccgcaacagcgcgctgtaccaggacctcaaggccggcgtcgcccccggcggc
atcgagtactacctgccgctgttcttcgaaaagcccggcagcgcccgccgcgaggccgcc
gaggcgaccgcgaccctgttcgactacctcggcgagcgtgcgctgccggtgctcggcgac
ggcatccacgaggccgccgacgcgttctggaagcagaccggtgagcgctacgagcagcgc
cgccacgacatcgaacgaccggtgctgaccccggccgagctgtacctgtcgcccgacgcc
atgcgcgagcgcctcaacaaggcgccgcgcatcgaggtctgcggcgagtcgcatccgcag
cgcgaacgcgcgcaggcgctgggcgagcagcccgcgcccagcctgccggtggccgcgcgc
gaccacgccccgggcgaggcgctgacctcgttcctgtccagctacccgggccgggtactg
atcgccgccgactcgccgggacggcgcgaggcgctgctggaggtgctggaacccgcgcag
ctgcgtccggcgacgctgccgggctggcgcgacttcctcgacggcgacgcccgcttcgcg
atcgcggtggcaccgctggaggacggcttcgccctggatgcgccgcagatcgcggtgctc
accgaacgccagctgttccccgagcgcgccagccagccgcgccggcgccgccgggtcggc
cgcgagccggagaccatcatccgcgacctcggcgagctgcgcgaaggcgcgccgatcgtc
cacgaggaccacggcgtcggccgctatcgcgggctgatcgtgctggaggccggcggcgag
cccggcgaatacctggagatcgagtacgccaagggcgaccgcctgtacgtgccggtcgcc
cagttgcacctgatcaaccgctactccggcgcctccgaggagaccgcgccactgcattcg
ctcggtggcgagcagtggagcaaggccaagcgcaaggcggccgagaaggtccgcgacgtc
gccgccgaactgctggagatccaggccaagcgccaggcccgcgccggactggcgatcgac
gtcgaccgggcgatgtacgagccgttcgcggccacgttcccgttcgaggagacgcccgac
cagcacgccgcgatcgaagcggtgatccgcgacctgcagtcgagccagccgatggaccgg
gtggtctgcggcgatgtcggcttcggcaagaccgaggttgcggtgcgcgcggccttcgtc
gccgccagcggcggccgccaggtcgccctgctggtgccgaccaccctgctggccgagcag
cactaccgcaacttccgcgaccgcttcgccgactggccgctgcgggtcgaggtactgtcg
cgcttcaagagcagcaaggagatcaaggccgagctcgacaagctcgccgagggccagctc
gacgtgatcgtcggcacccaccggctgctgcagaaggacgtgcgcttcaaggacctgggc
ctggtgatcgtcgacgaggagcagcgcttcggtgtgcgccagaaggaggcgctgaaggcg
ttgcgcgccaacgtgcacctgctgaccctgaccgcgacgccgatcccgcgcaccctgaac
atggcgatggccggcctgcgcgacctgagcatcatcgccaccccgcccgcgcaccggctg
gcggtgcagaccttcgtcgtgccctgggacgacgcccagctgcgcgaggcgttccagcgc
gagctctcgcgcggcggccaggtctacttcctgcacaacgacgtggaaagcatcggccgc
atgcagcggcagttgcaggaactggtgccggaggcgcgcatcggcatcgcccacggccag
atgcccgagcgcgagctggaaaaggtcatgctcgacttccacaagcagcgcttcaacgtg
ctgctgtgctcgaccatcatcgagtcgggcatcgacatccccaacgccaacaccatcatc
atcaaccgcgccgacaagttcggcctcgcccagctgcaccagttgcgcggacgggtcggc
cgctcgcaccaccgcgcctacgcctacctggtcacccccgaccgccgctcgatcaccccc
gacgcgcagaagcgcctggacgcgatcgcctcgatggacgagctcggcgccggcttcacc
ctcgccacccacgacctggagatccgcggcgccggcgagctgctgggcgaggaccagagc
gggcagatggccgaggtcggcttcagcctgtacaccgagctgctcgaacgcgcggtgcgc
tcgatccgccagggcaagctgcccgacgccgacgagaccgaggcccgcggcgccgaggtc
gaactgcacatcccggcgctgatccccgacgactacctgccggacgtgcacacccgtctg
accctgtacaagcggatcagcggcgcccgcgacaaggacgcgctgcgcgagatgcaggtg
gagatgatcgaccgtttcggcctgctgcccgacccggccaagcacctgttcgcggtcgcc
gaactcaagctcgacgccaccgcactgggcatccgcaagctcgacctgggcgaaaacggc
ggccgcgtgcagttcgtcgagaaacccaacgtcgacccgatggcgatcatcaaactgatc
cagggccaacccaagctctaccgcatggacggccccgacaaactgcgggtcaccctggaa
ctgcccgacgccatcgcccgcctggccgcggccaaggggttgctggtgatgctgtccaag
ggggggtga
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