Lysobacter maris: C9I47_1778
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Entry
C9I47_1778 CDS
T05495
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lmb
Lysobacter maris
Pathway
lmb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C9I47_1778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmb03019
]
C9I47_1778
03009 Ribosome biogenesis [BR:
lmb03009
]
C9I47_1778
Enzymes [BR:
lmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C9I47_1778
Messenger RNA biogenesis [BR:
lmb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C9I47_1778
Ribosome biogenesis [BR:
lmb03009
]
Prokaryotic type
rRNA helicases
C9I47_1778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
UvrA_inter
HEM4
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AWV07467
UniProt:
A0A2U9T8C1
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All DBs
Position
2210658..2212511
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AA seq
617 aa
AA seq
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MNNDSANDDSSPLGFGDLSLPEPLLKALSEVGYESPSPIQAATIPPLLEGRDLLGQAQTG
TGKTAAFALPILARVARAGAPAGQRKPRALVLAPTRELAIQVAEAFHKYAHHLPGFQVLP
IYGGQSYGPQLAALRRGVDVVVGTPGRIIDHLERGSLDLSQLECLVLDEADEMLRMGFID
DVEAVLKKTPETRQVALFSATMPAPIKRIAQTYLREPVEIAIKARTTTSDNVRQRYWWVS
GVHKLDALTRILEAEPFDAMIIFTRTKQATEELAEKLTARGFAAAAINGDVQQQQRERTV
QQLRDGRIDVLVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILF
VTPRERGMLRAIERATRQAIEAMELPSIDTVNEQRVNKFLGRIGESLERADLAMFRELVE
RYERERNVPMAEIAAALAGLVQGEQPLLLDKPKDKPRPEHPRPGSDRHGERGPRNRGEAM
FDDARPRERGPHERGPHVPDAGMETFRIEVGHTHGVKPGNIVGAIANEAELESRYIGRID
IRQDHSYVDLPEGMPRELMEHLKKVRVAGQPLRISRPGSIPEDDGRPPRRPHGGRPHPGK
PRGKPGPRGPKKPHRGR
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacgatagcgcgaacgacgacagcagccccctgggcttcggcgatctctcgctt
cccgagcccctgctcaaggccctgagcgaggtcggctacgagtcgccctcgccgatccag
gcggcgaccatcccgccgctgctggagggccgcgacctgctgggccaggcccagaccggc
accggcaagaccgccgcgttcgcgctgccgatcctggcccgggtcgcccgcgccggcgcg
cccgccggccagcgcaagccacgcgccctggtcctggcaccgacccgcgagctggcgatc
caggtcgccgaggccttccacaagtacgcccaccacctgcccggcttccaggtcctgccg
atctacggcggccagagctacggcccgcagctggccgccctgcgccgcggggtcgatgtc
gtggtcggcaccccgggccggatcatcgatcatctcgagcgcggctcgctcgacctgtcc
cagctcgagtgcctggtcctggacgaggccgacgagatgctgcggatgggcttcatcgac
gatgtcgaggcggtgctgaagaagaccccggagacgcgccaggtcgcgctgttctcggcg
acgatgccggcgccgatcaagcgcatcgcccagacctacctgcgcgaaccggtcgagatc
gcgatcaaggcccgcaccaccacctccgacaacgtccgccagcgctactggtgggtcagc
ggcgtgcacaagctcgacgcgctgacccggatcctggaggccgagccgttcgacgcgatg
atcatcttcacgcggaccaagcaggccaccgaggaactggccgagaagctgaccgcgcgt
ggcttcgccgccgccgcgatcaacggcgacgtccagcagcagcaacgcgaacgcaccgtc
cagcagctgcgcgacgggcgcatcgacgtgctggtcgccaccgatgtcgccgcccgcggc
ctcgacgtggaacggatcagccacgtgctgaactacgacattccctacgacaccgagagc
tacgtccaccgtatcggccgcaccggccgcgccggccgcagcggcgaggcgatcctgttc
gtgaccccccgcgaacgcggcatgctgcgggcgatcgagcgcgcgacccgccaggcgatc
gaggcgatggagctgccgagcatcgacaccgtcaacgagcagcgcgtcaacaagttcctc
ggccgtatcggcgaatcgctggagcgcgccgacctggcgatgttccgcgagctggtcgaa
cgctacgaacgcgagcgcaacgtgccgatggccgagatcgccgccgccctcgccggcctg
gtccagggcgaacagccgctgctgctggacaagcccaaggacaagccgcgccccgagcac
ccacgtcccggctccgaccgccacggcgagcgcggcccgcgcaaccgcggcgaggcgatg
ttcgacgacgcgcgcccgcgcgagcgtggcccgcacgaacgtggtccccacgtgcccgat
gccggaatggagaccttccgcatcgaggtcggccacacccatggggtcaagccgggcaac
atcgtcggcgcgatcgccaacgaggccgagctggaaagccgctacatcggccgcatcgac
atccgccaggaccacagctacgtcgacctgcccgagggcatgccgcgcgaactgatggaa
cacctgaagaaggtccgggtcgccggccagccgctgcggatcagccgcccgggcagcatc
ccggaggacgacggccgcccgccgcggcgcccgcacggcggacgcccgcaccccggcaag
ccgcgcggcaagcccggcccgcgcggccccaagaagccgcatcgcggacgctga
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