Listeria monocytogenes CLIP 80459 (serotype 4b): Lm4b_00882
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Entry
Lm4b_00882 CDS
T00898
Name
(GenBank) Putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lmc
Listeria monocytogenes CLIP 80459 (serotype 4b)
Pathway
lmc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lm4b_00882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmc03019
]
Lm4b_00882
03009 Ribosome biogenesis [BR:
lmc03009
]
Lm4b_00882
Enzymes [BR:
lmc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lm4b_00882
Messenger RNA biogenesis [BR:
lmc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lm4b_00882
Ribosome biogenesis [BR:
lmc03009
]
Prokaryotic type
rRNA helicases
Lm4b_00882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
NABP
Motif
Other DBs
NCBI-ProteinID:
CAS04650
LinkDB
All DBs
Position
906336..907889
Genome browser
AA seq
517 aa
AA seq
DB search
MTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPM
IHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN
PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL
FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAP
ELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVA
ARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTK
KRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDIAAAMLK
MLAKEPDKTPVHITEERPLPSRGGGGYKGKNGKGGKGGGYRGGSGKGGSYRDRNNSGKGR
RSGGGSGSGGGGNRDRRSGGGEQRSGGNKGNYSQKSK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaaattttcggagttcggactggacgaaaaaattgtaaaatcagtaaatcggatg
gggtttgaagaagcaacaccaatccaagaaaagacaattccactaggactagcaggtaaa
gacttaatcgggcaagcacaaacaggtactggtaaaacagccgcttttggtcttccaatg
attcacaaaattgaccaaaagagtaacaacgtacaagctttaattattgctccaacacgt
gaacttgcaatccaagtttctgaagagctttataaacttagctatgacaaacatgtacgt
gtgctagcggtttacggtggtagcgatatcagccgtcaaatccgttcacttaagaaaaac
ccacaaatcgtagttggtacgccaggacgtattttggatcatattaaccgtcgcacactg
aaactagaccacgtggaaacacttgtactagatgaagcagacgaaatgctaaacatgggc
ttcattgatgatatcgaaactattctaaaagaagtaccagcagaacgtcaaactttacta
ttttctgcaacaatgcctgatccaattcgccgtatcggtgaacgtttcatgcatagccca
gaacttattcgcattaaagcgaaagaaatgactgcactattaattgaacaattcttcgta
aaagtgcatgaaaaagaaaaatttgacgtattatctcgtttattagacgttcaagcaccg
gaactagctattgttttcggtcgtacgaaacgtcgtgtagacgaactatctcgcgcgctt
gatatgcgtggttacgtggctgaaggtatccacggtgacttgacgcaagcaaaacgtatg
agtgtactacgcaaatttaaagaaggaaaaattgatgttctagttgcaacagacgtagca
gctcgtggacttgatatttccggcgtaacacatgtatataactatgatattccacaagat
ccagaaagctatgttcaccgtatcggtcgtactggtcgtgctggtaaagaaggtatggcg
attactttcgtacaacctcgtgaaatgggttatttacgtattgtggaagaaactacgaaa
aaacgtatgcaaccacttcaagctcctacttgggacgaagcatttgcaggccaattacgc
gtagcaactgaaaaaattcaagaagcaatcacagaagaaaacttagctgactacaaaacg
tttgctaacgaacttcttgaaaaatacgatgcaactgacatcgcagcagcaatgcttaaa
atgttagcgaaagagccagacaaaactcctgtccatattactgaagagcgtccattacca
tcccgtggtggcggtggctacaaaggtaaaaatggtaaaggcggcaaaggtggcggctat
cgcggcggaagcggcaaaggcggaagctaccgcgatcgtaacaacagcggcaaaggtcgt
cgtagcggcggcggaagcggttctggcggtggtggcaatcgtgatcgtcgtagtggcggc
ggagaacaacgcagcggcggcaacaaaggcaactactcacaaaaatctaaataa
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