Listeria monocytogenes CLIP 80459 (serotype 4b): Lm4b_01254
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Entry
Lm4b_01254 CDS
T00898
Name
(GenBank) Putative ATP-dependent RNA helicase (DEAD motif)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lmc
Listeria monocytogenes CLIP 80459 (serotype 4b)
Pathway
lmc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lm4b_01254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmc03019
]
Lm4b_01254
03009 Ribosome biogenesis [BR:
lmc03009
]
Lm4b_01254
Enzymes [BR:
lmc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lm4b_01254
Messenger RNA biogenesis [BR:
lmc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lm4b_01254
Ribosome biogenesis [BR:
lmc03009
]
Prokaryotic type
rRNA helicases
Lm4b_01254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
CAS05020
LinkDB
All DBs
Position
1257157..1258569
Genome browser
AA seq
470 aa
AA seq
DB search
MNNLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQ
IEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHI
VVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSA
TMPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQTDNKEKTLKDVLITENPDSAIIFC
NTKNQVDELTDLLDVKVSKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVS
LVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLDVTIEKKRKPT
VIEVKANEEAFRKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKKIRAVDFVGTISKLEG
ITAEDIGIITIEDHVSFVEILNGKGPAVLEMMRSRKVKGRRLKVNEARKR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaataatttaaaattaagtgaagaaattaaaagagcgattaatgaactaggatataca
gaagcaacacccgttcaaaaagcggtaattccagttgccttaacaggagaagatattgtt
gctaaatcacaaactggtagtgggaaaacagcagcattcgctattcccattgcagaacag
attgaatgggaagaaaataagccacaagcactaatcatcgttccaacacgagaacttgca
atgcaagtcaagacagaatgtacgaatattggacgatttaaacgtgtcaaagctgcagca
atatacggacaatcaccatttgcgaaacaaaaattagaactaagccaaaaaaatcatatc
gtcgttgggacgcctggtcgcctgctggatcatattgaaaaaggatcactgaatgtcgac
aaggttgcccatttagttttagatgaagtagatgaaatgttaagcatgggatttattgat
caagtcgaagatattcttagccgtttaccaaaacagcgccaaaatctatttttctcagca
actatgccagaagaaatgcaagatttgattaaacgctaccaagatgatccaatggtaatc
gaaatggcatcggaaaaaacaaaccctatcttccacgtggagatgcaaacagataataaa
gaaaaaacgctaaaagatgttttgattacagaaaatccggatagcgcaataatattttgc
aatacgaaaaatcaagtcgatgaactcaccgatttacttgatgtaaaagttagtaaaatt
catgggggtttaagacaagaagaccgtttccgagcaatggatgattttaaaagtggcaaa
tcccgtttcttaattgcgacagatgtggcagggcgcggaatagatgtggataatgtatcg
ttagtcattaactacgatttaccaattgaaaaagaaaattatgtacatcgtatcggtcgt
actggtcgcgctggcaaaagtggtaaagctattagtttcgtgaaaacaaatgaaaatcca
cttttgcgtgacatagaagaaatgctcgatgttacaatcgaaaaaaaacgtaaaccgaca
gtgatagaagtgaaagctaacgaagaagctttccgcaaaaaacaacaaaagcgcccaaca
atcaaaaaagctcgtggggaaaaattaaataaaaacattatgaaactgtattttaatggt
ggaaaaaagaaaaaaattcgtgcagtagattttgttggaactatttctaaattagaagga
attacggccgaagatatcggaattattacgattgaagaccatgtttcttttgttgaaatt
ttaaatggaaaaggtccggcagtactggaaatgatgcgctctcgtaaagtaaaaggtaga
cgcctgaaagtaaacgaggccagaaaacgataa
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