Listeria monocytogenes CLIP 80459 (serotype 4b): Lm4b_01459
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Entry
Lm4b_01459 CDS
T00898
Name
(GenBank) Putative endonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
lmc
Listeria monocytogenes CLIP 80459 (serotype 4b)
Pathway
lmc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Lm4b_01459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmc03400
]
Lm4b_01459
Enzymes [BR:
lmc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
Lm4b_01459
DNA repair and recombination proteins [BR:
lmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Lm4b_01459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
CdhD
Motif
Other DBs
NCBI-ProteinID:
CAS05221
UniProt:
C1KV96
LinkDB
All DBs
Position
complement(1464881..1465774)
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AA seq
297 aa
AA seq
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MLRLGSHVSMSGKKMLLGASEEAASYGSNTFMIYTGAPQNTRRKPIEELNIEAGLEHMKA
HDMADIVVHAPYIINIGNSVKPETFELGVNFLQSEIERTRALGAKQIVLHPGAHVGEGAD
KGIKQIIQGLNEALIHDQDVQIALETMAGKGSECGRTFEEIAQIIDGVTHNELLSVTFDT
CHTHDAGYDIVNDFDGVLNEFDKIIGVDRLKVLHINDSKNECGAHKDRHANIGFGHIGFD
ALHYIVHHPQLADVPKILETPYVGEDKASKKAPYKWEIAMLRNGEFDPDLLNKIQNS
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgctaagattaggttctcatgtatcaatgagtggtaagaaaatgcttcttggcgcaagt
gaagaggcagcttcttatggctcaaatacgtttatgatttatactggcgctccgcaaaac
acgcgtagaaagccaattgaagaattaaatattgaagccggcttagaacacatgaaagca
catgatatggctgacatcgtcgttcacgcgccgtatatcatcaatattggcaattcagtg
aagccagaaacctttgaactaggtgttaatttcttgcaatctgaaattgaacgtacgcgt
gcgcttggtgccaagcaaatcgtacttcatcctggcgctcatgttggcgaaggggcagac
aaagggattaaacaaattatccaaggtcttaacgaagcattaatacatgatcaagatgta
caaattgctttagaaacaatggctggaaaaggttctgaatgcggacgtacttttgaagaa
attgctcaaattattgatggcgtaacgcataatgaattattatccgttactttcgatact
tgtcacacacatgatgctggttacgatattgtaaatgattttgacggggtgttaaatgaa
ttcgataaaattatcggtgttgatcgcttaaaagtgttacatatcaatgatagcaagaac
gaatgtggtgcacataaagaccgacacgctaacattggtttcggtcacattggctttgac
gcacttcattatattgtgcatcatccgcaattagcggacgtcccgaaaatccttgaaaca
ccttatgttggtgaagataaggcatcgaaaaaagcaccatataaatgggaaatcgcgatg
ttaagaaatggcgaatttgacccagatttattaaataaaatccaaaatagttaa
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