Listeria monocytogenes CLIP 80459 (serotype 4b): Lm4b_02458
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Entry
Lm4b_02458 CDS
T00898
Symbol
uvrB
Name
(GenBank) excinuclease ABC (subunit B)
KO
K03702
excinuclease ABC subunit B
Organism
lmc
Listeria monocytogenes CLIP 80459 (serotype 4b)
Pathway
lmc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Lm4b_02458 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmc03400
]
Lm4b_02458 (uvrB)
DNA repair and recombination proteins [BR:
lmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Lm4b_02458 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Lm4b_02458 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
P-loop_SecA
AAA
HEM4
UB2H
AAA_30
AAA_7
AAA_19
DUF5662
AAA_22
DUF87
AAA_5
PMT2_N
Motif
Other DBs
NCBI-ProteinID:
CAS06213
LinkDB
All DBs
Position
complement(2538205..2540181)
Genome browser
AA seq
658 aa
AA seq
DB search
MKDKFELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPT
LVMAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEID
KLRHSATAALFERRDVIIIASVSCIYGLGSPIEYGEMLVSLRVGMEISRDQLLRKLVDIQ
YDRNDIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGEREH
VSIFPASHFVTRPDIMKKAIVNIKAELEDRLQVLRADNKLLEAQRLEQRTNYDLEMMEEM
GYCSGIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGDQARKQM
LVDHGFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVIEQIIRPTGLLDP
IVEIRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVK
TLERIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGR
AARNENGRVIMYADKMTDSMRNSIGETERRRKIQIEYNEKHGITPKTIKKEIRGIIAATS
AADEREAVKQHDLSKMSKKERDVFIEGMEHEMKEAAKALDFERAAELRDALLEIKAEG
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
ttgaaggataaatttgagttagtttctaagtatagcccacaaggagaccaacctagagcg
atagaacaattagttgcgggattaaaaaaaggcttgaaacaccaaactttacttggtgca
accggtacagggaaaacttttaccgtatccaacgtgattcaggaagtaaataagccaaca
cttgtcatggcccacaataagacgttagcgggacagctgtatagcgagtttaaagaattt
ttcccaaataatgctgtagaatattttgtcagttactatgattactatcaaccagaagcc
tatgttccgcaaagcgacacgtatatcgaaaaagatgcaagtatcaatgatgaaattgat
aagcttcgtcactctgctaccgctgcgctttttgaacgtcgtgatgtaattatcattgcg
agtgtatcgtgtatttatggcttaggttcgccgattgaatatggtgagatgctcgtttcg
cttcgtgttggtatggaaattagccgtgatcagctactgcgtaaattagtagacattcaa
tatgatcgaaatgatatagattttcaacgtgggcgcttccgtgttcgcggcgatgttgtc
gaaattttcccggcatcaagagacgagcactgcatgaggattgaatttttcggtgatgaa
attgaacgtattagagaggtagatgcacttactggcgaaattattggagaaagagaacat
gtttccattttcccggcatctcactttgttaccagacctgatattatgaaaaaagcaatt
gttaatataaaagcggaactcgaagaccgccttcaagttttacgtgcagataataaatta
ctcgaagcacaacgtcttgaacaacggacgaattatgatttagaaatgatggaagaaatg
ggttattgctctggtattgagaactattctagacatttatcccttcgtccagcgggagtt
acaccatacacgttactcgattacttcccagacgatttccaaatggtaattgatgagtca
cacgttacgatgccacaaatccgtggtatgtttaacggtgaccaagccagaaaacaaatg
ctagttgatcatggttttagactaccaagtgctttagataaccgtccgctaagattagaa
gaatttgaaaaacatatcaatcaaattatgttcatttccgccacaccaggcccttatgaa
ctagaaaaaaatccggatgtcattgaacaaatcatccgaccaaccggtttgctagatcca
atcgtagaaattcgcccgattcaaggacaaatcgatgacttaatggatgagattaatgat
cgtgtcgagaaaaacgaacgtgttttaatcaccactttaacgaaaaaaatgtcagaggat
ttgaccaattatctcaaagaagctggtgttaaagtacaatatctccactcggaagtgaag
acgttagagcgaatcgaaatcattcgcgacctccgacttggtgtgtatgatgttatcgtt
ggaattaatttacttcgcgaaggaatcgatttacctgaagtatctcttgtcgctatttta
gatgcggacaaagaaggattccttcgttccgagcgttccttaattcaaacaatgggtcga
gccgctcgtaatgaaaacggtcgagtaatcatgtatgctgataaaatgaccgattcgatg
cgcaattctattggcgaaacagaacgccgtcgtaaaatccaaattgaatataatgaaaaa
catggcattacgccaaaaacaatcaaaaaagaaattcgtggtatcatcgcagcgacttct
gccgcagatgaaagagaagcagtgaagcaacatgatttaagcaaaatgtctaagaaagaa
cgcgatgtgttcattgaaggtatggaacatgaaatgaaagaagcagccaaagcacttgat
ttcgaacgtgctgctgaacttcgcgatgctttactggaaataaaagcggaaggatga
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