KEGG   Leisingera methylohalidivorans: METH_00465
Entry
METH_00465        CDS       T02961                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
lmd  Leisingera methylohalidivorans
Pathway
lmd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lmd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    METH_00465
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lmd03019]
    METH_00465
   03009 Ribosome biogenesis [BR:lmd03009]
    METH_00465
Enzymes [BR:lmd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     METH_00465
Messenger RNA biogenesis [BR:lmd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     METH_00465
Ribosome biogenesis [BR:lmd03009]
 Prokaryotic type
  rRNA helicases
   METH_00465
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_22 AAA_33
Other DBs
NCBI-ProteinID: AHC99368
UniProt: V9VNU6
LinkDB
Position
complement(90303..92348)
AA seq 681 aa
MKQALANALQERGYETLTQVQEAVTQPELEERDLLVSAQTGSGKTVGFGLALAPTLLGEA
EAFDEAAAPLALVIAPTRELALQVKHELSWLYRGAGAVIASCVGGMDMRDERRTLARGAH
IVAATPGRLRDHIMRGSIDLSNLRAVVLDEADEMLDLGFREDLEFILGEAPEDRRTLLFS
ATVPAGIASLAETFQRDAMRIKTAGETKQHSDIEYRLMSVAQQDAENAIINVLRYYEAPS
SIVFANTRAAVNRLAARLTNRGLPVVTLSGELSQAERSQALQAMRDGRARVCVATDVAAR
GIDLPGLELVVHAELPSNHETLLHRSGRTGRAGRKGVSALIAPPKARSKALRLLKWAKLT
AEHCEAPSADDILARDEERMLADPVWQEAVSEQEQAGVQTLLEHFSAEQIAATYLRLFRS
RHSAPEDLRPAGAEEPRKERKERKPFGPSVWFSLSGGRAAGADPRKVLPMLCKAGNIDRD
SIGAIRVQDNETFAEISKAAIDGFLKALDGKAELEPGAVLTQLSEAPDLGPAPRRGPGGP
KGGFKGDRDPKPHRGKPDSPKPYRGKTEDSRPPRKDWQEKRSADKAPFEREPRRSRAPES
SPKPEPAVVAKPRGASDPSKRMTKPGAPAAKPYHTKGPKPPAGKPNSKKNKARAADAKPG
KLRKGGDARPNRKPAGPSKHR
NT seq 2046 nt   +upstreamnt  +downstreamnt
gtgaaacaagccctggccaacgcactgcaagagcgcggatatgaaaccctgacccaagtg
caggaggctgtgacccagccggagcttgaagagcgcgacctgctggtttcggcccagacc
ggatcaggcaagacagtcggcttcggacttgcgcttgcgccaaccctgctgggtgaggcc
gaggcgtttgacgaggccgccgctccgttggcactggtgatcgcaccaacccgcgagctg
gcactgcaggtgaagcacgagctgagctggctttaccgtggcgctggtgcggtgattgca
tcctgcgtgggcggcatggacatgcgggacgaacgccgcacactggcccgcggcgcgcat
atcgtggccgcgacaccggggcggctgcgcgaccacatcatgcgcggctccatcgacctc
agcaacctgcgcgcggtggtgctggacgaggccgacgagatgctcgacctgggcttccgc
gaggatcttgaattcatcctgggcgaagcgcccgaagaccgccggacactgctgttctcg
gccactgttccagcaggcattgccagcctcgccgaaaccttccagcgcgatgcgatgcgg
atcaaaaccgcaggcgaaaccaaacagcacagcgatatcgaataccggctgatgagcgtg
gcgcaacaggatgcggaaaacgccatcatcaacgtgctgcgctactacgaggcccccagc
tccatcgtctttgccaatacccgtgcagcagtgaaccggctggcggcacggctgaccaac
cgcggcctgccggtggtgacactgtcgggcgaactctcccaagctgaacgcagtcaagcg
ctgcaggcgatgcgcgacgggcgggcccgggtctgtgtggccaccgatgttgctgcccgc
ggcatcgacctgccggggttggagctggtggttcacgccgagctgccttcgaaccacgaa
acccttctgcaccggtccggccggacagggcgcgcgggccgcaaaggcgtcagcgcactg
atcgcgccgcccaaggcccgcagcaaagcgctgcggttgctgaaatgggccaagctgacg
gcagagcattgcgaggcgccctcggctgatgacatcctggcacgggatgaggagcggatg
ctggcggatcccgtctggcaggaagcggtttcggagcaagagcaggcaggagttcaaact
ctgctggagcatttctccgccgaacagattgccgccacctacctgcgcctgttccgaagc
cgccattcggcaccggaagacctgcgcccggccggtgcggaggaaccacgcaaagaacgt
aaggagcgcaagcctttcgggccgtcggtgtggttctcgctttcgggcgggcgggcagcc
ggtgcggacccgcgcaaggtgctgccgatgctctgcaaggccggtaacatcgaccgcgat
tccatcggtgcgatccgggtgcaggacaatgagacctttgccgaaatcagcaaggccgcg
attgacggttttctgaaagcactggacggcaaggcggaactggagccgggcgccgtgttg
acccagctttccgaggctcccgatctgggcccggccccgcgccgcggccccggcggaccg
aagggcggcttcaaaggtgaccgggaccccaagccgcaccgtggtaaaccggatagtccg
aaaccatatcgcggcaaaaccgaagacagccgcccgccgcgcaaggactggcaggaaaag
cgctctgctgacaaggcgcctttcgaacgcgagccgcgccgcagccgcgcgccggaaagc
agccccaagcctgagccggctgttgtagccaagccgcgcggcgcatccgatccttccaag
cggatgaccaagcccggcgcgcctgcagcaaaaccttaccacaccaaaggccccaaaccg
ccggccggcaaaccaaacagcaagaaaaacaaggcgcgtgccgccgatgccaagccgggc
aaacttcgcaaaggtggagatgcccgcccgaaccgcaagccggcgggaccctcaaaacac
aggtga

DBGET integrated database retrieval system