Entry |
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Name |
(GenBank) DEAD/DEAH box helicase
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KO |
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Organism |
lmd Leisingera methylohalidivorans
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:lmd00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
METH_00465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:lmd03019]
METH_00465
03009 Ribosome biogenesis [BR:lmd03009]
METH_00465
Enzymes [BR:lmd01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
METH_00465
Messenger RNA biogenesis [BR:lmd03019]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
METH_00465
Ribosome biogenesis [BR:lmd03009]
Prokaryotic type
rRNA helicases
METH_00465
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
complement(90303..92348)
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AA seq |
681 aa
MKQALANALQERGYETLTQVQEAVTQPELEERDLLVSAQTGSGKTVGFGLALAPTLLGEA
EAFDEAAAPLALVIAPTRELALQVKHELSWLYRGAGAVIASCVGGMDMRDERRTLARGAH
IVAATPGRLRDHIMRGSIDLSNLRAVVLDEADEMLDLGFREDLEFILGEAPEDRRTLLFS
ATVPAGIASLAETFQRDAMRIKTAGETKQHSDIEYRLMSVAQQDAENAIINVLRYYEAPS
SIVFANTRAAVNRLAARLTNRGLPVVTLSGELSQAERSQALQAMRDGRARVCVATDVAAR
GIDLPGLELVVHAELPSNHETLLHRSGRTGRAGRKGVSALIAPPKARSKALRLLKWAKLT
AEHCEAPSADDILARDEERMLADPVWQEAVSEQEQAGVQTLLEHFSAEQIAATYLRLFRS
RHSAPEDLRPAGAEEPRKERKERKPFGPSVWFSLSGGRAAGADPRKVLPMLCKAGNIDRD
SIGAIRVQDNETFAEISKAAIDGFLKALDGKAELEPGAVLTQLSEAPDLGPAPRRGPGGP
KGGFKGDRDPKPHRGKPDSPKPYRGKTEDSRPPRKDWQEKRSADKAPFEREPRRSRAPES
SPKPEPAVVAKPRGASDPSKRMTKPGAPAAKPYHTKGPKPPAGKPNSKKNKARAADAKPG
KLRKGGDARPNRKPAGPSKHR |
NT seq |
2046 nt +upstreamnt +downstreamnt
gtgaaacaagccctggccaacgcactgcaagagcgcggatatgaaaccctgacccaagtg
caggaggctgtgacccagccggagcttgaagagcgcgacctgctggtttcggcccagacc
ggatcaggcaagacagtcggcttcggacttgcgcttgcgccaaccctgctgggtgaggcc
gaggcgtttgacgaggccgccgctccgttggcactggtgatcgcaccaacccgcgagctg
gcactgcaggtgaagcacgagctgagctggctttaccgtggcgctggtgcggtgattgca
tcctgcgtgggcggcatggacatgcgggacgaacgccgcacactggcccgcggcgcgcat
atcgtggccgcgacaccggggcggctgcgcgaccacatcatgcgcggctccatcgacctc
agcaacctgcgcgcggtggtgctggacgaggccgacgagatgctcgacctgggcttccgc
gaggatcttgaattcatcctgggcgaagcgcccgaagaccgccggacactgctgttctcg
gccactgttccagcaggcattgccagcctcgccgaaaccttccagcgcgatgcgatgcgg
atcaaaaccgcaggcgaaaccaaacagcacagcgatatcgaataccggctgatgagcgtg
gcgcaacaggatgcggaaaacgccatcatcaacgtgctgcgctactacgaggcccccagc
tccatcgtctttgccaatacccgtgcagcagtgaaccggctggcggcacggctgaccaac
cgcggcctgccggtggtgacactgtcgggcgaactctcccaagctgaacgcagtcaagcg
ctgcaggcgatgcgcgacgggcgggcccgggtctgtgtggccaccgatgttgctgcccgc
ggcatcgacctgccggggttggagctggtggttcacgccgagctgccttcgaaccacgaa
acccttctgcaccggtccggccggacagggcgcgcgggccgcaaaggcgtcagcgcactg
atcgcgccgcccaaggcccgcagcaaagcgctgcggttgctgaaatgggccaagctgacg
gcagagcattgcgaggcgccctcggctgatgacatcctggcacgggatgaggagcggatg
ctggcggatcccgtctggcaggaagcggtttcggagcaagagcaggcaggagttcaaact
ctgctggagcatttctccgccgaacagattgccgccacctacctgcgcctgttccgaagc
cgccattcggcaccggaagacctgcgcccggccggtgcggaggaaccacgcaaagaacgt
aaggagcgcaagcctttcgggccgtcggtgtggttctcgctttcgggcgggcgggcagcc
ggtgcggacccgcgcaaggtgctgccgatgctctgcaaggccggtaacatcgaccgcgat
tccatcggtgcgatccgggtgcaggacaatgagacctttgccgaaatcagcaaggccgcg
attgacggttttctgaaagcactggacggcaaggcggaactggagccgggcgccgtgttg
acccagctttccgaggctcccgatctgggcccggccccgcgccgcggccccggcggaccg
aagggcggcttcaaaggtgaccgggaccccaagccgcaccgtggtaaaccggatagtccg
aaaccatatcgcggcaaaaccgaagacagccgcccgccgcgcaaggactggcaggaaaag
cgctctgctgacaaggcgcctttcgaacgcgagccgcgccgcagccgcgcgccggaaagc
agccccaagcctgagccggctgttgtagccaagccgcgcggcgcatccgatccttccaag
cggatgaccaagcccggcgcgcctgcagcaaaaccttaccacaccaaaggccccaaaccg
ccggccggcaaaccaaacagcaagaaaaacaaggcgcgtgccgccgatgccaagccgggc
aaacttcgcaaaggtggagatgcccgcccgaaccgcaagccggcgggaccctcaaaacac
aggtga |