Leisingera methylohalidivorans: METH_00995
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Entry
METH_00995 CDS
T02961
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lmd
Leisingera methylohalidivorans
Pathway
lmd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lmd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
METH_00995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmd03021
]
METH_00995
03400 DNA repair and recombination proteins [BR:
lmd03400
]
METH_00995
Enzymes [BR:
lmd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
METH_00995
Transcription machinery [BR:
lmd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
METH_00995
DNA repair and recombination proteins [BR:
lmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
METH_00995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
Aldolase
DUF7567
Motif
Other DBs
NCBI-ProteinID:
AHC99464
UniProt:
V9VQ56
LinkDB
All DBs
Position
183208..187452
Genome browser
AA seq
1414 aa
AA seq
DB search
MNQEITNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLSYGQMMTEEEYMDAQDAYGMDAFT
ANIGAEAIRDMLAQIDLESEAETLRAELAEATGELKPKKIIKRLKVVESFLESGNRPEWM
IMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTLEREGMPGEGMVFGSIEEVQHAL
DAGVVHLHTKITARITQFDEEGNEVKSRFETTPGRVRLGALLPKNVKAPFELVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDTKWTLVDETRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTDAMMGTISADKRDEAGAVMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRENDCGTERAITAEAAVNDGEVVATLGERLLGRV
AADDILRPGTEEVIIAAGQLIDERMADAVEEAGVQSTRIRSPLTCESEEGVCAMCYGRDL
ARGTKVNEGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQEGKIVFEMPQ
TLENANGETLVVGRNMKLIIQDEHGEERASHKLGYGSKLFVKEGQNVARGDKLFEWDPYT
LPIIAEKPGTAKYVDLVSGLAVRDETDEATGMTQKIVIDWRTAPKGSDLKPEIILVDSNG
EPMRNDLGNPLTYPMSVDAILSVEDGEQVVAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGRDYKNKRRIAIEPSDETRDPVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILSIMGVEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
ISDSGDTTLLKGEHVDKQEFDQANEKSLARGKRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTGGATQAVRAIAQGRDNVVLEARRE
EAEAAAALAAPVMDDDAMGGDDLDILVETPESRD
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaaatcaccaacaacccgttcaacccgctgacgccgcccaaggtctttgat
gaaatcaaagtctcgctggcgtcgccggaacggatcctgtcgtggtcctatggcgaaatc
aaaaagcctgagaccatcaactatcggaccttcaagcccgagcgcgacggcctgttctgc
gcccgcatcttcggcccgatcaaagactacgaatgcctctgcggcaaatacaagcggatg
aaataccgcggcgtcgtctgcgaaaaatgcggcgtcgaagtcaccctgcagaaagtccgc
cgcgagcggatgggccacatcgaactggccgcaccggttgcgcacatctggttcctgaag
tcgctgccgtcccgcatcggcctgatgctggacatgaccctgcgcgatctggaacgggtt
ctgtattttgaaaactacgttgtcatcgagccgggcctgaccgacctctcctatggtcag
atgatgaccgaagaagagtatatggacgcccaggatgcctatggcatggacgccttcacc
gccaacatcggcgccgaagcgatccgtgacatgctggcccagatcgacctggaatcggaa
gccgaaacgctgcgcgccgaactggccgaagccaccggcgaactgaagcccaagaagatc
atcaagcgtctgaaagtcgtggaatccttcctcgagtcgggcaaccgtccggaatggatg
atcatgaccgtgatcccggtcatcccgccggaactgcgtccgctggtgccgctggacggc
ggccgctttgcgacctccgacctgaacgacttgtaccgccgcgtgatcaaccggaacaac
cgtctgaagcgtctgatcgaactgcgcgcgcccgacatcatcgtccgcaacgaaaagcgg
atgctgcaggagtccgttgacgctctgttcgacaacggccgccgcggccgcgtcatcacc
ggtgccaacaagcgtccgctgaagtcgctctccgacatgctgaaaggcaagcagggccgc
ttccgtcagaaccttctgggtaagcgcgtcgacttctccggccgttcggtgattgtgacc
ggtcccgagctgaagctgcatcagtgcggcctgcccaagaagatggcgctcgaactgttc
aagcccttcatctattcgcgtctggaggccaaaggtctgtccagcaccgtgaaacaggcg
aagaaactggtcgagaaagagcgccccgaagtctgggacatccttgacgaggtgatccgc
gaacacccggtgatgctgaaccgcgcaccgacgctgcaccgtcttggcatccaggcgttc
gaacccacgctgatcgaaggcaaggcgatccagctgcacccgctggtctgctcggcgttc
aacgcggacttcgacggcgaccagatggctgtgcacgtgccgctgagccttgaggcccag
ctggaagcgcgcgtcctgatgatgtcgaccaacaacgttctgtcgccggccaacggcgca
ccgatcattgttccttcgcaggatatgattctgggtctctactatgtgactctggaacgc
gaaggcatgccgggcgaaggcatggtgttcggctcgatcgaggaagttcagcacgcgctg
gacgctggtgttgtgcacctgcacaccaagatcactgcccggatcacccagtttgacgag
gaaggcaacgaggtcaagtcgcggtttgaaaccacgccgggccgtgtccgtctgggcgcg
ttgctgccgaaaaacgtcaaagcgccgtttgaactggtcaaccgcctgctgcggaagaaa
gaagtgcagcaggtcatcgacaccgtctaccgctactgcggccagaaagagtcggttatc
ttctgtgaccagatcatgaccatgggcttccgcgaagcgttcaaggcgggcatttcgttc
ggcaaggacgacatggtgatccccgacaccaaatggacgctggtcgacgagacccgcgat
caggtgaaggactttgaacagcagtacatggacggcctgatcacccagggcgaaaagtac
aacaaagttgtcgatgcctggtccaagtgtaacgacaaggtcaccgacgcgatgatgggc
accatctccgcagacaagcgcgacgaggctggcgccgtgatggaaccgaactcggtttac
atgatggcccactccggtgcgcgtggctcggttacccagatgaagcagctgggcggcatg
cgcggcctgatggccaagccgaacggcgacatcatcgagaccccgatcatctcgaacttc
aaagaaggcctgaccgttctcgagtacttcaactcgacccacggtgcccgtaagggtttg
tccgataccgcgcttaagacggcgaactcgggttacctgacccgccgtctggtggacgtg
gcgcaggactgcatcgtgcgcgagaatgattgcggcaccgaacgtgcgatcactgccgaa
gcggctgtgaacgacggtgaagttgtcgccaccctgggcgaacgtcttctgggccgtgtg
gccgcagacgacatcctgcgtccgggcaccgaggaagtcatcatcgcagccggccagctg
atcgacgaacgcatggcggacgccgtggaagaggccggcgttcagtcgacccgtatccgc
tcgccgctgacctgtgagtcggaagagggcgtctgcgccatgtgctacggccgtgacctg
gcgcgcggcaccaaggtgaacgaaggcgaagcggtgggtatcatcgcggcgcagtcgatc
ggtgaaccgggcacccagctgaccatgcggactttccacatcggcggcgttgcacagggc
ggccagcagtcgttcctggaagcgtcccaggaaggcaagatcgtcttcgagatgccgcag
accctggagaacgccaacggcgagaccctggttgtgggccgcaacatgaagctgatcatc
caggacgagcacggcgaagagcgggccagccacaagctgggctacggctccaagctgttc
gtcaaggaaggccagaacgttgcccgcggcgacaagctgttcgaatgggatccctatacc
ctgccgatcatcgccgagaagccgggtaccgccaaatacgtggacctggtctcgggcctg
gcggtccgtgacgagaccgacgaagccaccggcatgacccagaagatcgtgatcgactgg
cgcacggctccgaaaggctcggatctgaaaccggagatcatcctggtcgacagcaacggc
gagccgatgcgcaacgacctgggcaatccgctgacttacccgatgtcggtggatgcgatc
ctctcggtcgaagacggcgagcaggttgtggccggcgacgttgtcgcgcggatcccgcgt
gaaggcgccaagaccaaggacatcaccggtggtctgcctcgcgttgcggaactgttcgaa
gcccgccgtccgaaagaccacgcgatcatcgccgaaatcgatggttacgtgcgcttcggc
cgcgactacaagaacaagcgccgcatcgcgattgaaccgtcggacgagacacgggacccc
gtcgaatacatggtgcccaagggcaagcacattccggttcaggaaggtgattttgtccag
aagggcgactacatcatggacggcaacccggcgccgcatgacatcctgtccatcatgggt
gtcgaggctctggccaactacatgatcgacgaggttcaggacgtctaccgcctgcagggt
gtgaagatcaacgacaagcacatcgaggtgatcgtccgccagatgctgcagaagtgggag
atctcggactccggcgacaccacgctgctcaaaggcgaacacgtggacaagcaggagttt
gaccaggccaacgagaaatcgctggcccgcggcaagcgtccggcgcagggcgaaccgatc
ctgctcggcatcaccaaggcgtcgctgcagacccgctcgttcatctcggcggcctccttc
caggagaccacccgcgtcctcaccgaggcttcggtgcagggcaagaaggacaagctggtg
ggtctcaaggagaacgtcatcgtgggccgtctgatcccggccggcaccggcggcgcgacc
caggcggtgcgcgccattgcccagggccgcgacaacgtggttctggaagcccgccgcgaa
gaagccgaagccgctgcagccctggccgcaccggtgatggacgacgatgcgatgggcggc
gacgatctggatatcctggtcgaaaccccggaaagccgcgactaa
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integrated database retrieval system
