Leisingera methylohalidivorans: METH_04120
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Entry
METH_04120 CDS
T02961
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lmd
Leisingera methylohalidivorans
Pathway
lmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
METH_04120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmd03019
]
METH_04120
Enzymes [BR:
lmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
METH_04120
Messenger RNA biogenesis [BR:
lmd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
METH_04120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AHD00009
UniProt:
V9VQN6
LinkDB
All DBs
Position
complement(790718..792049)
Genome browser
AA seq
443 aa
AA seq
DB search
MTTFDNLGLAEPILKAIAAEGYSTPTPIQAKVIPLLLSERDVIGVAQTGTGKTASFVLPL
LHRIVRENSKPAAKQCNALILTPTRELAAQIVDNIRAYSRFSNISTTLVVGGVRPGGQIK
ALSGGVDIVVATPGRLLDHLGTGVINLTATKAIVVDEADQMLDLGFLPSIRKIMAKLPKP
RMTALLSATMPGQIRKLADDFLNHPAEVQVAAVSKPVERIAQSVRHVAKQGKRQVLADIL
LDQGVHRAVVFTRTKRGADNVCKHLIAAGINAAAIHGNKSQPQRDRAMAGFRSGAVTVLV
ATDIAARGIDIDGVSHVVNFELPNVPETYVHRIGRTARAGRTGIAISLCDREELPLLRDI
EKLIGDRLPGVDDAKNGHLKPDPAAEVQTSPAGEPASVQKIRPANRAKQSRNGQQQHKID
PAQAQDGLMRMLANTGGFTQPAA
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
ttgacgacatttgacaacctcggcctggccgaacccatcctgaaggccatcgcggctgaa
ggatattcaacccctacgcccattcaggccaaggtcattccgctgcttctatctgaacgc
gacgtgattggcgttgcccagaccggcacaggaaaaaccgcctcattcgtgttgcctttg
ctgcaccggattgtgcgtgagaattcaaaacccgccgcaaaacaatgcaacgccttgatc
ctgacgcccacgcgtgaacttgcggcgcagatcgtggacaatatccgcgcttacagccgt
ttcagcaatatttccacgacgcttgtcgtcggtggtgtgcgccccggcgggcagatcaaa
gcccttagcggcggcgtggatattgtggtggcgacgcccggccgcctgcttgatcacctt
ggcacaggcgttatcaacctgaccgcaaccaaagccattgtggttgatgaggccgatcag
atgctggatctgggctttctgccgagcattcgcaagatcatggcgaagctgcccaagccg
cggatgacggcgcttctttcggcaaccatgccgggacagatcagaaaactggccgatgac
tttctgaatcatccggcagaagtgcaggtggcagcagtttccaagccggtcgaacggatt
gcgcagagcgtcaggcatgtggccaagcagggcaaacgtcaggtgctggcagacattctg
ttggaccaaggcgtgcatcgcgctgttgtgttcacgcgcaccaaacgcggtgccgacaac
gtctgcaagcacctgattgctgccgggataaacgctgcagccattcacggcaacaaaagc
cagccgcagcgcgatcgcgccatggcggggttccggtcgggcgcggtcaccgttcttgtg
gccaccgatatcgccgcacggggcatagatattgacggcgtgtcccacgtggtgaatttc
gagcttccaaatgtgcctgaaacttatgtgcatcgcattggcagaacggcccgtgcaggc
cgaaccggtattgcgatttcactttgcgaccgcgaagaactgcctttgctgcgggacatc
gaaaagctgatcggcgaccggctgccaggcgttgatgatgcaaaaaacgggcatttgaaa
cccgatcctgcagcggaggtgcaaacctcccctgcaggagaaccggcatcggtgcaaaaa
atacgtccagccaatcgggcaaagcaaagccggaatggacaacagcaacacaagattgac
ccggctcaggctcaggacggtcttatgcgaatgctcgccaatactggcgggttcacccaa
cctgctgcctga
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