Leisingera methylohalidivorans: METH_07680
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Entry
METH_07680 CDS
T02961
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
lmd
Leisingera methylohalidivorans
Pathway
lmd03030
DNA replication
lmd03430
Mismatch repair
lmd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
METH_07680
03430 Mismatch repair
METH_07680
03440 Homologous recombination
METH_07680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmd03032
]
METH_07680
03400 DNA repair and recombination proteins [BR:
lmd03400
]
METH_07680
Enzymes [BR:
lmd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
METH_07680
DNA replication proteins [BR:
lmd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
METH_07680
DNA repair and recombination proteins [BR:
lmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
METH_07680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
RNase_H_2
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
AHD00596
UniProt:
V9VPF7
LinkDB
All DBs
Position
complement(1468576..1469979)
Genome browser
AA seq
467 aa
AA seq
DB search
MHARLSLRLRIFLFFCALALGGIAVTTGALWLGYSRAGQPGLTDAFVFSGLLSGFAILGL
CAAVWLLFDENVAKPIERLAAGMRARAHAGVSRALDTHGAQYLGDLAAAAEGLAGQLGDS
ALSAAEAIARETEHLEAEKNRLAALLTDIPIATVMVNPSHQIVLYDGQAAAVLAQEAPPR
LNAPLSDYLDLTGLEAAYGRLIRSGTEVQAEVKSASGTQVFDLRLKPLGGAPGYIILFEG
SHAELAPGDSRPLVYDFALLETDHAELDSRKLSNLSYVVFDTETTGLLPHKDEIVQIGAL
RIVRGRIIESESFETLVDPGRPIPAASTKVHGISDALVQGAPVISDAARAFHQFASDAVI
VAHNAPFDMAFLHRHAKRTGFSWDQPVLDTVLLSAVLFGASQNHTLDALCERLDVAIPPA
LRHTAMGDARATAEVFCKMLPMLEARGLATFGAVLEESRKHGRLMKT
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgcacgcgcgcctcagcttgcgtttgcgcatcttcctgtttttctgcgccttggcgctt
ggcggcattgcggtcaccacaggcgcgctgtggctgggctacagccgcgctggacagccc
ggactgacggatgccttcgtcttttccggcctgctcagcggttttgccatccttggtctc
tgcgccgcggtttggctgctgtttgacgaaaacgtcgccaaaccaatcgagcggctggcg
gccggcatgcgcgcccgcgcccatgccggcgtatcgcgggcgctcgacacccatggcgcg
caatatctcggtgatctggcagccgcagcggaggggttggccgggcaattgggagactcg
gcgctgtccgcggctgaagcaatagcccgcgaaaccgagcatctggaggccgaaaaaaac
cgcctcgcggccttactgacggacatccctattgccaccgtgatggttaacccttcccat
cagatcgtgctctacgacggccaggccgccgcggtgctggcacaggaggccccgccgcgt
ctgaatgcgccgctgtccgattacctggacctcaccggtctggaggccgcctatggccgg
ctgatacgaagcgggacggaagtgcaggccgaagtcaaaagcgccagcggcacccaggtg
tttgacctgcggctgaaacccttgggcggcgctccaggctacatcattctgttcgaaggg
agccatgcggaactcgccccgggagactcccggcccttggtctatgacttcgcgctgctg
gaaacggaccacgccgagctggacagccgcaagctcagcaatctcagctatgtggtgttt
gacaccgaaaccaccggactgctgccgcataaggacgagattgtgcagatcggcgcactg
cggattgtccggggccgtattatcgaaagcgagtcgtttgaaacccttgtggatccgggt
cggccaatccctgctgcttcaaccaaagtgcatggcatcagcgatgccctggtgcagggc
gcgccggtgatttccgacgccgcccgcgcctttcaccaatttgcctcggacgccgtgatc
gtggcccacaacgcgccctttgacatggcctttctgcaccgccacgccaagcgcacgggt
ttcagttgggaccagccggtgctggacaccgtgctgctgagcgcagtactgttcggcgcc
tcgcagaaccacacgctggacgcgctatgcgaacggttggacgtcgccatccctccggcc
ctgcgccacaccgcgatgggggacgcccgcgccaccgctgaggtattctgcaagatgctg
ccgatgcttgaggcacgcgggcttgccacctttggcgcggtgctggaagaatcccgcaag
cacggacgcctcatgaagacatga
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