Leisingera methylohalidivorans: METH_13210
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Entry
METH_13210 CDS
T02961
Name
(GenBank) recombination protein RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lmd
Leisingera methylohalidivorans
Pathway
lmd03410
Base excision repair
lmd03430
Mismatch repair
lmd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
METH_13210
03430 Mismatch repair
METH_13210
03440 Homologous recombination
METH_13210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmd03400
]
METH_13210
DNA repair and recombination proteins [BR:
lmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
METH_13210
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
METH_13210
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
METH_13210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Prok-RING_1
QRPTase_C
Motif
Other DBs
NCBI-ProteinID:
AHD01515
UniProt:
V9VVW4
LinkDB
All DBs
Position
2541427..2543166
Genome browser
AA seq
579 aa
AA seq
DB search
MSFLGVEQSLTGRRWVGPGVEVDRASEMMAQQTGLPRSVCQVLARRGVPAMEAKGFLEPR
LKELLPDPREMKDMETAATRFLAAVRGRQRIAVFADYDVDGGSSAALLLVWLRQMELEAT
LYIPDRIDEGYGPNVPAMQQLAAAHDLIICVDCGTLSHEPIAAAEGADVIVLDHHLGGET
LPDCVAVVNPNRQDESGDLGYFCAAGVVFLMLVEAGRQLREAGAKGPDLMALLDLVALAT
VADVAPLIGANRALVRQGLKVMGARRRPGLVALSDVSRMDSAPSTYHLGFLLGPRVNAGG
RIGKADLGARLLATDNPHEAAALAERLDELNTERRDIENAVRAAALEQAEERGLDAPLVW
AAGEGWHPGVVGIVASRLKEAANRPAVVIGFDGDEGKGSGRSVSGVDLGASIQRLAAEGL
LVKGGGHKMAAGLTVMRDKLEPAMARLSELLEKQGAGQGGPADIKLDGALMPGAVTVDLI
EQIEHAGPFGAGAPAPRYALPDLQVRFAKKVGESHLKLSLSDGMGGGVDGICFGAFDTAL
GPRLLEHGGARFHFAGRLEVNSWGGRQNPQLRLEDAAEA
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgagctttttgggtgttgagcagtccttgaccggccgccgctgggttgggcccggcgtt
gaggtggaccgcgcgtccgagatgatggcgcagcagaccggcctgccccgctccgtctgc
caggttctggcccggcgcggcgtgccggcgatggaagctaaggggtttctggaaccaagg
ctgaaagagctgctgcccgacccgcgcgagatgaaagacatggaaacggccgccacaagg
tttctggcggctgtgcgcggccgccagcggattgcggtctttgccgattatgacgtcgac
ggcggtagctctgccgcgctgctgctggtctggctgcggcagatggagctggaagcaaca
ctgtacatccccgaccgcatcgacgagggctatggcccgaacgtgcctgccatgcagcag
ctggccgccgcccatgatctgatcatctgtgtggactgcggcaccctcagccatgagccg
attgccgccgccgaaggcgccgacgtgatcgtgctggaccaccacctgggcggcgagacc
ttgcccgactgcgttgcggtggtgaatcccaaccgacaggacgagagcggcgatctgggc
tatttctgcgcggcgggggtggtgttcctgatgctggtagaagcaggccgccaactgcgc
gaggccggcgccaaggggccggacctgatggcgctgctggatctggtggcgctggccacg
gtggcggacgtggcgccgctgatcggcgccaaccgcgcattggtgcgccaggggctgaag
gtgatgggcgcacgccgccgtcccggcctggtggcgctgtcggatgtcagccgcatggat
tcggcgccctcgacctatcatctggggttcctcttggggccgcgggtcaacgccggcggg
cggatcggcaaggcagacctgggcgcgcggctgctggccaccgacaatccgcatgaagcc
gccgccctggccgagcggctggatgagctgaacaccgaacgccgcgacatcgagaacgcc
gtgcgcgccgctgcgctggagcaggccgaagagcgcggattggatgcgccgctggtctgg
gccgccggcgagggctggcatcctggcgtggtcggcatcgtcgcctcccggctgaaagaa
gccgccaaccgccccgccgttgtgatcggttttgacggggatgagggcaaggggtccggc
cggtccgtgtccggcgtcgacctgggcgcgtcgatccagcggctggcggcagaagggctg
ctggtcaaaggcggcggccacaagatggcggccggccttaccgtgatgcgggacaagctg
gagccggcgatggcgcggctgtcggaactcctcgaaaaacaaggcgcaggtcagggcggg
ccggcagacatcaagctggacggcgccttgatgcccggtgccgtgacggttgacctgatc
gaacagatcgagcacgccggcccatttggcgctggcgcccctgccccgcgctatgcgctg
ccggatcttcaggtgcggtttgccaagaaagtgggcgagagccatctgaaactttcgctc
agtgacggcatgggcggcggcgtggacgggatctgctttggcgcctttgacacggcgctt
ggcccccgcctgctggaacacggcggcgcccgcttccatttcgccgggcggttggaagtg
aacagctggggcggccgccaaaacccgcagctgcgcctggaagacgcggccgaagcctga
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